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Report for CCDS24908.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24908.1 Public Mus musculus 11 Slc35g3 23 108 98 CCDS HistoryNCBI Gene:56293Re-query CCDS DB by CCDS ID:24908.1Re-query CCDS DB by GeneID:56293See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 24908.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000231829.1 ENSMUSP00000156297.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000231829.1Link to Ensembl Protein Viewer:ENSMUSP00000156297.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000231829Re-query CCDS DB by Protein ID:ENSMUSP00000156297
Original member Current member NCBI NM_019871.2 NP_063924.2 Accepted alive Link to Nucleotide Sequence:NM_019871.2Link to Protein Sequence:NP_063924.2Re-query CCDS DB by Nucleotide ID:NM_019871Re-query CCDS DB by Protein ID:NP_063924Link to BLAST:NP_063924.2

Chromosomal Locations for CCDS 24908.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69760135 69761154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69761616 69761684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGCTGAAGCTCTGCAGGGGACCAGGCAACCTGACCCAGGAGGAGAGGAGGAAGTCCAAGAAGAGATGG
CTGCCAGTCATCCCTATTTCAACCTACCTGACTTCACCCAGCCATCGCCGCCCTCCACTCCAGCCAGCCT
CCCCTCCAAACATCACCATCGCTGTGGGCCCTCCAATGCCACCAAAGGCCTGTTTGTGGCCCTGCTGGGT
GGAGGCCTGTCTGCTGGCTTCGTGGGCCCATTCTCCCGTATGGCTTACCAGACCTCCCAGTTGCCCTCGT
TGGAGCTGCTCATCTTCCGATGCCTCTTCCACCTCCCCATTGCCTTGTTACTTAAGTTCCGTGGTGATCC
ACTGCTGGGACCTCCTGATGTTCGGGTTCGGGCCTTCCTCCATGCCATTCTTAATGTCCTCAGCATTGGT
TGCGCCTACAGTGCTGTTCAGGTGGTGCCTGCCGGCAACGCAGTCACTGTCCGCAAAGGTTCTTCCACCG
TGTGCTCTGCCCTCCTGGCACTCTGCCTCGAGAGCCAGGGTCTCAGTGGCTATGCCTGGTGTGGCCTGTT
TGGCAGCACCCTTGGGCTAATCATCATCGTGGGACCTGGACTAGGGACACTGCAAGAAGGGACTACTGGC
CTCTACACAGCCCTGGGCTATGTACTGGCTTTCCTGGGAGGACTGGCACTGTCACTGGGGCTGCAGATTT
ACCGCTCTCTACACTTCCCTTCCTGTCTACCAACTGTGGCCTTCCTTTTTGGCCTGGTGGGGCTAATGGT
CTCTGTACCAGGCCTCTTTGTGCTGCAGACCCCTGTGCTACCCCAAGACACTCTAAGCTGGAGCTGTGTG
GTGGCAGTGGGGCTCCTTGCATTGGTTTCCTTTGTATGTGTGAGCTATGCAGTCACCAAGGCCCACCCTG
CCCTGGTATGTGCTGTCCTGCACTCTGAGGTCGTGGTAGCCCTCATGCTGCAGTATTACGTGCTCTATGA
GACCGTGGCACCTTCTGACATCATGGGAGCAGGGGTTGTGTTGGGCAGCATTGCCATCATTACTGCCCAG
AACCTCAGTTGTGATAAGGAAGGGCAAACGGAGGAATGA

Translation (362 aa):
MAEALQGTRQPDPGGEEEVQEEMAASHPYFNLPDFTQPSPPSTPASLPSKHHHRCGPSNATKGLFVALLG
GGLSAGFVGPFSRMAYQTSQLPSLELLIFRCLFHLPIALLLKFRGDPLLGPPDVRVRAFLHAILNVLSIG
CAYSAVQVVPAGNAVTVRKGSSTVCSALLALCLESQGLSGYAWCGLFGSTLGLIIIVGPGLGTLQEGTTG
LYTALGYVLAFLGGLALSLGLQIYRSLHFPSCLPTVAFLFGLVGLMVSVPGLFVLQTPVLPQDTLSWSCV
VAVGLLALVSFVCVSYAVTKAHPALVCAVLHSEVVVALMLQYYVLYETVAPSDIMGAGVVLGSIAIITAQ
NLSCDKEGQTEE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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