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Report for CCDS36853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36853.1 Public Mus musculus 14 Nisch 23 108 98 CCDS HistoryNCBI Gene:64652Re-query CCDS DB by CCDS ID:36853.1Re-query CCDS DB by GeneID:64652See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36853.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022469.12 ENSMUSP00000022469.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022469.12Link to Ensembl Protein Viewer:ENSMUSP00000022469.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000022469Re-query CCDS DB by Protein ID:ENSMUSP00000022469
Original member Current member NCBI NM_022656.2 NP_073147.2 Accepted alive Link to Nucleotide Sequence:NM_022656.2Link to Protein Sequence:NP_073147.2Re-query CCDS DB by Nucleotide ID:NM_022656Re-query CCDS DB by Protein ID:NP_073147Link to BLAST:NP_073147.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073147.2 1593 Q80TM9-1 1593 100% 0 0

Chromosomal Locations for CCDS 36853.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 31171568 31172178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31172437 31172598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31173064 31173192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31173587 31173743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31174256 31174886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31176330 31177712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31179836 31179885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31180822 31180949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31184942 31185050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31185312 31185425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31186759 31186887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31187059 31187244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31187650 31187718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31188639 31188794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31189731 31189826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31190996 31191091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31191385 31191548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31192581 31192629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31203227 31203409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31204442 31204525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 31206567 31206662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4782 nt):
ATGGCGGCTGCGACACTCAGCTTCGGCCCTGAGCGGGAGGCCGAGCCTGCCAAGGAGGCGCGCGTCGTGG
GTTCTGAGCTCGTGGACACGTACACGGTTTATGTCATCCAGGTTACCGATGGCAACCATGAGTGGACGAT
CAAACACCGTTACAGTGATTTTCATGACCTACATGAAAAGCTTGTGGCAGAGAGAAAAATTGACAAATCT
CTACTTCCACCCAAAAAGATAATTGGGAAGAACTCGAGAAGCTTGGTAGAGAAGAGGGAGAGAGACCTGG
AGGTGTACCTCCAGACGCTCCTCACAACCTTCCCTGATGTGGCTCCCAGAGTTCTGGCCCACTTCCTGCA
TTTTCACCTCTATGAAGTAAATGGTGTCACTGCAGCACTGGCTGAAGAACTCTTTGAAAAAGGAGAGCAA
CTTCTAGGAGCCGGTGAGGTCTTTGCCATCAGGCCCTTGCAGCTCTATGCTATCACAGAACAGCTGCAAC
AGGGAAAGCCTACTTGTGCCAGTGGTGATGCCAAGACTGACCTTGGACACATCCTAGACTTCACCTGTCG
CCTTAAGTATCTTAAGGTTTCAGGCACAGAAGGACCTTTTGGGACCAGCAATATTAAGGAGCAGCTCTTG
CCCTTTGATCTTTCAATATTCAAGTCTCTTCACCAGGTGGAGATAAGTCATTGTGATGCCAAGCATATCC
GAGGGCTGGTCACCTCCAAGCCCACTTTAGCCACAATGAGTGTTAGATTCTCAGCAACCTCAATGAAGGA
AGTGCTTGCTCCTGAAGCCTCAGAATTTGATGAGTGGGAGCCTGAAGGCACTGCTACCCTCGGAGGCCCT
GTGACTGCTATCATCCCAACATGGCAAGCACTGACTACTCTAGACCTGAGCCACAACAGCATCTGTGAGA
TCGACGAATCTGTGAAACTGATCCCAAAGATAGAGTACCTGGACCTGAGTCACAATGGACTGCGAGTTGT
GGATAACCTGCAGCACCTATACAACCTCGTGCACCTTGACCTGTCCTACAACAAGCTCTCCTCCCTGGAA
GGCGTGCACACTAAACTGGGCAATGTCAAAACCCTAAACCTGGCAGGCAACTTCTTAGAGAGTCTGAGCG
GTCTGCACAAACTCTACTCCTTGGTTAATGTGGACCTACGAGACAACCGGATTGAGCAGTTGGATGAGGT
CAAGAGCATTGGCAGCCTGCCATGTCTGGAGCGTTTGACCTTGCTGAACAACCCTTTGAGCATCATCCCT
GACTACCGGACCAAGGTGCTTTCCCAGTTTGGAGAACGAGCCTCTGAGATTTGTCTAGATGATGTCGCAA
CCACAGAGAAAGAGCTGGACACTGTGGAAGTGCTGAAGGCAATTCAGAAAGCCAAAGATGTCAAGTCCAA
ACTGAGCAACACAGAAAAGAAGGCTGGTGAGGACTTCCGGCTCCCGCCTGCACCCTGCATCAGACCCGGC
GGCTCCCCTCCTGCAGCTCCCGCCTCAGCCTCCCTGCCTCAGCCGATCCTCTCCAACCAAGGTATCATGT
TTGTACAGGAAGAGGCCCTGGCCAGCAGCCTCTCATCCACGGATAGTCTGCCACCCGAGGACCACCGGCC
CATTGCCCGAGCCTGCTCTGACTCCTTGGAATCTATCCCTGCAGGACAGGTGGCCTCTGATGATCTGAGG
GATGTGCCAGGAGCTGTTGGCGGCGTGAGCCCAGATCATGCAGAGCCAGAGGTTCAGGTGGTGCCTGGGT
CCGGCCAGATCATCTTCCTGCCCTTCACTTGCATTGGCTACACAGCCACCAACCAGGACTTTATCCAGCG
CCTCAGCACACTGATCCGCCAGGCCATTGAACGGCAACTCCCTGCCTGGATTGAGGCTGCCAACCAGCGC
GAGGAAGCCCATGGTGAGCAGGGCGAGGAGGAAGAAGAGGAAGAGGAAGAGGAGGATGTTGCTGAGAACC
GCTACTTTGAAATGGGACCCCCAGACGCAGAGGAAGAGGAGGGGAGTGGCCAGGGAGAAGAGGATGAGGA
AGACGAGGACGAGGAGGCGGAGGAGGAGCGCCTGGCTCTGGAGTGGGCCCTGGGCGCCGATGAGGACTTC
CTGCTGGAGCACATCCGCATCCTCAAGGTGCTCTGGTGCTTCCTGATCCACGTGCAAGGCAGCATCCGCC
AGTTCGCTGCCTGCCTTGTGCTCACTGACTTCGGCATCGCAGTCTTTGAGATCCCACACCAAGAGTCAAG
AGGCAGCAGCCAGCACATCCTCTCATCCCTGCGTTTTGTCTTCTGCTTCCCACATGGCGACCTCACGGAG
TTTGGCTTCCTCATGCCCGAGCTGTGTCTGGTGCTCAAGGTGCGGCACAGTGAGAACACGCTCTTCATCA
TCTCGGATGCTGCCAACTTACACGAGTTCCATGCTGATCTACGCTCCTGCTTTGCACCGCAGCACATGGC
CATGCTGTGCAGCCCCATCCTCTACGGCAGCCACACCACCCTGCAGGAGTTCTTGCGCCAGCTGCTCACC
TTCTACAAGGTGGCCGGGGGCTCTCAGGAGCGCAGCCAGGGCTGCTTCCCTGTCTACCTGGTCTACAGTG
ACAAGCGCATGGTCCAGACCCCTGCCGGGGACTATTCAGGCAATATCGAATGGGCCAGCTGCACGCTGTG
CTCGGCGGTGCGGCGCTCCTGCTGCGCGCCCTCGGAGGCCGTCAAGTCCGCTGCCATCCCCTACTGGCTG
CTGCTCACATCCCAGCATCTCAACGTCATCAAGGCCGACTTCAACCCCATGCCCAATCGAGGCACCCACA
ACTGCCGCAACCGCAACAGCTTCAAGCTTAGCCGCGTCCCGCTCTCTACCGTGCTGCTAGACCCCACTCG
CAGCTGCACCCAGCCACGGGGTGCCTTCGCTGATGGCCATGTGCTCGAGCTGCTCGTGGGCTACCGCTTC
GTTACCGCCATCTTTGTGCTGCCCCACGAGAAATTCCACTTCCTGCGAGTCTACAATCAGCTACGCGCCT
CACTGCAGGACCTGAAGACTGTGGTCATCTCCAAGAATCCTTCAGCTAAGCCAAGAAATCAGCCTGCCAA
GAGCAGGGCCAGTGCTGAGCAGCGGCTACAGGAGACCCCAGCAGACGCTCCGGCTCCAGCTGCAGTCCCA
CCAACAGCTTCAGCTCCAGCCCCCGCAGAGGCCTTGGCTCCAGATCTGGCTCCTGTACAGGCCCCAGGAG
AGGACCGAGGTCTAACTTCAGCAGAGGCTCCAGCCGCAGCAGAGGCTCCAGCCGCAGCAGAGGCTCCAGC
CGCAGCAGAGGCTCCAGCCGCAGCAGAGGCTCCAGCCGCAGCAGAGGCTCCAGCCGCAGCAGAGGCTCCG
GCCCCAGCAGAGGCTCCAGCCGCAGCAGAGGCTCCGGCCGCAGCAGAGGCTCCAGCTGCAGCAGAGGCTC
CAGCCGCAGCAGAGGCTCCAGCTTCAGCAGAGGCTCCAGCTCCAAACCAGGCTCCTGCTCCAGCAAGGGG
TCCCGCTCCAGCAAGGGGTCCCGCTCCAGCAGGGGGTCCCGCTCCAGCAGAGGCCCTGGCACAAGCAGAA
GTCCCTGCCCAGTACCCAAGTGAGCGCCTAATCCAGTCCACATCTGAAGAGAATCAGATCCCTTCTCACT
TGCCAGTATGCCCATCACTCCAGCACATTGCCCGTCTTCGGGGGAGAGCCATCATTGACCTCTTCCACAA
CAGCATTGCTGAGGTTGAAAATGAGGAGCTGAGGCACCTCCTGTGGTCATCAGTGGTGTTCTACCAGACC
CCGGGGCTAGAAGTGACCGCCTGTGTGCTGCTCTCTAGCAAGGCTGTGTACTTCATACTGCATGATGGTC
TCCGCCGCTACTTCTCTGAACCACTGCAGGATTTCTGGCACCAGAAAAACACCGACTATAACAACAGTCC
TTTCCACGTCTCTCAGTGCTTTGTGTTGAAACTCAGTGACCTGCAGTCAGTCAACGTCGGCCTTTTCGAC
CAGTACTTCCGGCTGACGGGCTCCTCCCCGACGCAGGTGGTCACGTGCTTGACTCGCGACAGCTACCTGA
CGCACTGCTTCCTCCAGCATCTGATGCTTGTGCTGTCCTCCCTGGAGCGCACACCCTCGCCTGAGCCTGT
TGACAAGGACTTCTACTCAGAATTTGGGGACAAGAATACAGGGAAAATGGAGAACTATGAGCTGATCCAT
TCCAGCCGCGTCAAGTTCACCTACCCCAGTGAGGAAGAGGTTGGGGACCTGACCTATATTGTCGCACAGA
AGATGGCTGATCCTGCAAAGAATCCAGCCCTCAGCATCTTACTGTACATCCAGGCCTTCCAGGTGGTCAC
ACCACACCTTGGGCGGGGCAGGGGCCCACTGCGCCCTAAGACGCTGCTCCTGACCAGCGCCGAGATCTTC
CTCCTGGATGAGGACTACATCCACTATCCATTGCCTGAATTTGCCAAAGAGCCACCGCAGAGGGACAGAT
ACCGGCTAGACGATGGCCGCCGGGTCCGGGATTTGGACCGGGTGCTCATGGGCTACTATCCCTACCCACA
GGCCCTCACTCTTGTTTTTGATGACACACAGGGTCACGACCTCATGGGGAGTGTCACCCTGGACCACTTT
GGGGAGATGCCAGGTGGTCCTGGCAGGGTTGGCCAGGGCCGAGAGGTACAGTGGCAGGTGTTTGTCCCCA
GTGCCGAGAGCCGAGAAAAGCTCATCTCACTGCTCGCACGACAGTGGGAAGCTCTTTGTGGCAGGGAGCT
GCCTGTGGAGCTCACTGGCTAG

Translation (1593 aa):
MAAATLSFGPEREAEPAKEARVVGSELVDTYTVYVIQVTDGNHEWTIKHRYSDFHDLHEKLVAERKIDKS
LLPPKKIIGKNSRSLVEKRERDLEVYLQTLLTTFPDVAPRVLAHFLHFHLYEVNGVTAALAEELFEKGEQ
LLGAGEVFAIRPLQLYAITEQLQQGKPTCASGDAKTDLGHILDFTCRLKYLKVSGTEGPFGTSNIKEQLL
PFDLSIFKSLHQVEISHCDAKHIRGLVTSKPTLATMSVRFSATSMKEVLAPEASEFDEWEPEGTATLGGP
VTAIIPTWQALTTLDLSHNSICEIDESVKLIPKIEYLDLSHNGLRVVDNLQHLYNLVHLDLSYNKLSSLE
GVHTKLGNVKTLNLAGNFLESLSGLHKLYSLVNVDLRDNRIEQLDEVKSIGSLPCLERLTLLNNPLSIIP
DYRTKVLSQFGERASEICLDDVATTEKELDTVEVLKAIQKAKDVKSKLSNTEKKAGEDFRLPPAPCIRPG
GSPPAAPASASLPQPILSNQGIMFVQEEALASSLSSTDSLPPEDHRPIARACSDSLESIPAGQVASDDLR
DVPGAVGGVSPDHAEPEVQVVPGSGQIIFLPFTCIGYTATNQDFIQRLSTLIRQAIERQLPAWIEAANQR
EEAHGEQGEEEEEEEEEEDVAENRYFEMGPPDAEEEEGSGQGEEDEEDEDEEAEEERLALEWALGADEDF
LLEHIRILKVLWCFLIHVQGSIRQFAACLVLTDFGIAVFEIPHQESRGSSQHILSSLRFVFCFPHGDLTE
FGFLMPELCLVLKVRHSENTLFIISDAANLHEFHADLRSCFAPQHMAMLCSPILYGSHTTLQEFLRQLLT
FYKVAGGSQERSQGCFPVYLVYSDKRMVQTPAGDYSGNIEWASCTLCSAVRRSCCAPSEAVKSAAIPYWL
LLTSQHLNVIKADFNPMPNRGTHNCRNRNSFKLSRVPLSTVLLDPTRSCTQPRGAFADGHVLELLVGYRF
VTAIFVLPHEKFHFLRVYNQLRASLQDLKTVVISKNPSAKPRNQPAKSRASAEQRLQETPADAPAPAAVP
PTASAPAPAEALAPDLAPVQAPGEDRGLTSAEAPAAAEAPAAAEAPAAAEAPAAAEAPAAAEAPAAAEAP
APAEAPAAAEAPAAAEAPAAAEAPAAAEAPASAEAPAPNQAPAPARGPAPARGPAPAGGPAPAEALAQAE
VPAQYPSERLIQSTSEENQIPSHLPVCPSLQHIARLRGRAIIDLFHNSIAEVENEELRHLLWSSVVFYQT
PGLEVTACVLLSSKAVYFILHDGLRRYFSEPLQDFWHQKNTDYNNSPFHVSQCFVLKLSDLQSVNVGLFD
QYFRLTGSSPTQVVTCLTRDSYLTHCFLQHLMLVLSSLERTPSPEPVDKDFYSEFGDKNTGKMENYELIH
SSRVKFTYPSEEEVGDLTYIVAQKMADPAKNPALSILLYIQAFQVVTPHLGRGRGPLRPKTLLLTSAEIF
LLDEDYIHYPLPEFAKEPPQRDRYRLDDGRRVRDLDRVLMGYYPYPQALTLVFDDTQGHDLMGSVTLDHF
GEMPGGPGRVGQGREVQWQVFVPSAESREKLISLLARQWEALCGRELPVELTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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