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Report for CCDS15153.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15153.1 Public Mus musculus 1 Cops8 23 108 98 CCDS HistoryNCBI Gene:108679Re-query CCDS DB by CCDS ID:15153.1Re-query CCDS DB by GeneID:108679See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15153.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036153.11 ENSMUSP00000035884.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036153.11Link to Ensembl Protein Viewer:ENSMUSP00000035884.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036153Re-query CCDS DB by Protein ID:ENSMUSP00000035884
Original member Current member NCBI NM_133805.3 NP_598566.3 Accepted alive Link to Nucleotide Sequence:NM_133805.3Link to Protein Sequence:NP_598566.3Re-query CCDS DB by Nucleotide ID:NM_133805Re-query CCDS DB by Protein ID:NP_598566Link to BLAST:NP_598566.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598566.3 209 Q8VBV7 209 100% 0 0

Chromosomal Locations for CCDS 15153.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 90603550 90603627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90604375 90604445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90605464 90605512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90606537 90606669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90610093 90610200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90610975 90611037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90611540 90611587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 90612174 90612253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (630 nt):
ATGCCAGTGGCGGTGATGGCGGACAACGCCTTCAGTTTCAGAAAGCTGTTGGATCAGTGCGAGAACCAGG
AACTCGAGGCTCCTGGAGGAATTGCCACACCGCCAGTGTACGGTCAGCTTCTAGCTTTGTACTTGCTCCA
GAACGACATGAATAATGCAAGATATCTGTGGAAGAGGATACCACCTGCTATAAAGTCTGCAAATTCTGAA
CTTGGGGGAATTTGGTCAGTTGGACAGCGAATCTGGCAAAGAGATTTCCCTGGGATCTATACAACCATCA
ACGCCCACCAGTGGTCAGAGACTGTGCAGCCAATCATGGAAGCCCTTAGAGATGCAACAAGGAGACGCGC
CTTTGCCCTGGTCTCTCAAGCTTATACCTCCATCATCGCAGATGATTTTGCAGCGTTTGTTGGACTTCCT
GTGGAAGAGGCTGTGAAAGGCGTGTTGGAACAAGGATGGCAGGCCGACTCCACCACAAGAATGGTTCTTC
CCAGGAAGCCAGCCTCAGGAACCCTGGATGTCTCCTTGAACAGGTTTATCCCCTTATCAGAGCCTGCCCC
AGTTCCGCCAATCCCCAATGAGCAGCAGCTCGCCCGGCTCACCGATTATGTGGCTTTCCTGGAAAACTGA

Translation (209 aa):
MPVAVMADNAFSFRKLLDQCENQELEAPGGIATPPVYGQLLALYLLQNDMNNARYLWKRIPPAIKSANSE
LGGIWSVGQRIWQRDFPGIYTTINAHQWSETVQPIMEALRDATRRRAFALVSQAYTSIIADDFAAFVGLP
VEEAVKGVLEQGWQADSTTRMVLPRKPASGTLDVSLNRFIPLSEPAPVPPIPNEQQLARLTDYVAFLEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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