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Report for CCDS24976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24976.1 Public Mus musculus 11 Aipl1 23 108 98 CCDS HistoryNCBI Gene:114230Re-query CCDS DB by CCDS ID:24976.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24976.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048207.9 ENSMUSP00000036279.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048207.9Link to Ensembl Protein Viewer:ENSMUSP00000036279.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000048207Re-query CCDS DB by Protein ID:ENSMUSP00000036279
Original member Current member NCBI NM_053245.2 NP_444475.2 Accepted alive Link to Nucleotide Sequence:NM_053245.2Link to Protein Sequence:NP_444475.2Re-query CCDS DB by Nucleotide ID:NM_053245Re-query CCDS DB by Protein ID:NP_444475Link to BLAST:NP_444475.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444475.2 328 Q924K1 328 100% 0 0

Chromosomal Locations for CCDS 24976.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72029254 72029456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72030207 72030348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72030426 72030602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72031417 72031605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72036612 72036791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72037363 72037458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGACGTCTCTCTACTCCTCAATGTGGAGGGTGTCAAGAAGACCATTCTGCATGGGGGGACGGGAGAGC
TCCCCAGCTTCATCACTGGCTCTCGAGTGACCTTTCATTTCCGCACAATGAAGTGTGATGACGAGCGCAC
GGTGATCGATGACAGCAAGCAGGTGGGCCAGCCCATGAGCATCATCATCGGCAACATGTTCAAGCTGGAG
GTGTGGGAGACGCTGCTGACCTCCATGCGGCTGGGCGAGGTGGCTGAGTTCTGGTGCGACACCATTCACA
CAGGGGTCTACCCTATGTTGTCCCGCAGTCTGCGGCAGGTGGCTGAGGGCAAGGACCCCACAAGCTGGCA
TGTGCACACGTGCGGGTTGGCCAACATGTTTGCATACCACACGCTGGGCTACGAGGACCTGGATGAGCTG
CAGAAAGAGCCACAGCCTCTTGTCTTCCTGATTGAACTGTTGCAGGTGGAGGCCCCAAATGAGTACCAGA
GGGAGACGTGGAACCTGAATAATGAAGAGAGGATGCAGGCGGTACCTCTTCTTCATGGAGAAGGCAACAG
GCTCTACAAGCTGGGACGCTATGATCAGGCCGCCACCAAGTACCAGGAGGCCATTGTGTGCCTGAGGAAC
CTTCAGACCAAGGAGAAGCCCTGGGAGGTTGAGTGGCTGAAGCTGGAGAAGATGATCAACACCCTGATCC
TCAACTACTGCCAGTGCCTGCTGAAGAAGGAGGAGTACTACGAGGTGTTGGAGCACACCAGCGACATTCT
ACGACACCACCCAGGGATCGTGAAGGCCTACTATATGCGCGCACGTGCTCACGCAGAGGTGTGGAACGCT
GAGGAGGCCAAGGCGGACCTGGAGAAAGTGCTGGAGTTGGAGCCATCCATGCGCAAGGCGGTGCTCAGGG
AACTGCGGCTGCTGGAGAGCCGCCTGGCGGACAAACAGGAGGAGGAGCGGCAGCGCTGCCGGAGCATGCT
GGGCTAG

Translation (328 aa):
MDVSLLLNVEGVKKTILHGGTGELPSFITGSRVTFHFRTMKCDDERTVIDDSKQVGQPMSIIIGNMFKLE
VWETLLTSMRLGEVAEFWCDTIHTGVYPMLSRSLRQVAEGKDPTSWHVHTCGLANMFAYHTLGYEDLDEL
QKEPQPLVFLIELLQVEAPNEYQRETWNLNNEERMQAVPLLHGEGNRLYKLGRYDQAATKYQEAIVCLRN
LQTKEKPWEVEWLKLEKMINTLILNYCQCLLKKEEYYEVLEHTSDILRHHPGIVKAYYMRARAHAEVWNA
EEAKADLEKVLELEPSMRKAVLRELRLLESRLADKQEEERQRCRSMLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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