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Report for CCDS20423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20423.1 Public Mus musculus 6 Creld1 23 108 98 CCDS HistoryNCBI Gene:171508Re-query CCDS DB by CCDS ID:20423.1Re-query CCDS DB by GeneID:171508See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20423.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032422.5 ENSMUSP00000032422.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032422.5Link to Ensembl Protein Viewer:ENSMUSP00000032422.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000032422Re-query CCDS DB by Protein ID:ENSMUSP00000032422
Original member Current member NCBI NM_133930.2 NP_598691.1 Accepted alive Link to Nucleotide Sequence:NM_133930.2Link to Protein Sequence:NP_598691.1Re-query CCDS DB by Nucleotide ID:NM_133930Re-query CCDS DB by Protein ID:NP_598691Link to BLAST:NP_598691.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598691.1 420 Q91XD7 420 100% 0 0

Chromosomal Locations for CCDS 20423.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 113483903 113484076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113484495 113484577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113488071 113488181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113488479 113488570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113489434 113489610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113489695 113489790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113491653 113491736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113491894 113491989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113492124 113492258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 113492687 113492901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGCTCCACTGCCCCCAAGGGGCCTGGTCCCATCTCTGCTCTGGTGCTTGAGCCTGTTTCTGAGCCTCC
CAGGACCTGTCTGGCTCCAACCCTCTCCTCCTCCCCATCCTTCTCCCCGAGCTGAGCCCCATCCGTGTCA
TACCTGCCGGGCACTGGTGGACAACTTCAACAAGGGCCTGGAGAGAACCATCCGGGACAACTTCGGGGGT
GGAAACACGGCCTGGGAGGAAGAGAAGTTGTCCAAATACAAAGACAGTGAGACCCGCCTGGTGGAGGTGC
TGGAGGGCGTGTGCAGCAGGTCAGACTTCGAGTGCCACCGCCTGCTCGAGCTGAGCGAGGAGCTGGTGGA
AAACTGGTGGTTTCACAGGCAGCAGGAAGCCCCCGACCTCTTCCAGTGGCTCTGTTCCGATTCCCTGAAG
CTCTGCTGCCCCTCTGGCACCTTTGGGCCCTCCTGCCTGCCATGTCCTGGGGGCACAGAGAGGCCCTGCG
GTGGCTACGGGCAGTGTGAAGGGGAAGGGACTCGAGGGGGCAGCGGGCACTGTGACTGCCAAGCCGGCTA
TGGGGGCGAGGCCTGTGGCCAGTGTGGCCTTGGCTACTTTGAGGCGGAGCGCAACAGCAGCCATCTGGTA
TGTTCGGCGTGTTTTGGTCCTTGTGCCCGCTGCACGGGACCTGAGGAATCCCATTGTCTGCAGTGCAAGA
AAGGCTGGGCCCTGCATCACCTCAAGTGTGTAGACATCGATGAGTGTGGTACAGAGCAAGCCACCTGTGG
AGCTGACCAGTTCTGTGTGAACACAGAAGGATCCTACGAGTGCCGAGACTGTGCAAAGGCCTGCCTGGGC
TGTATGGGAGCAGGGCCAGGGCGCTGCAAAAAGTGCAGCCGTGGCTACCAGCAGGTGGGCTCCAAGTGCC
TAGATGTGGATGAGTGTGAGACTGTGGTGTGTCCAGGAGAGAATGAGAAGTGTGAAAACACGGAGGGAGG
CTACCGCTGTGTCTGTGCTGAGGGCTACAGACAGGAGGACGGCATCTGCGTGAAGGAGCAGGTCCCGGAG
TCGGCGGGCTTCTTTGCGGAGATGACGGAGGATGAAATGGTGGTTCTGCAGCAGATGTTCTTTGGTGTAA
TCATCTGTGCGCTGGCCACGCTTGCTGCCAAGGGTGACTTGGTGTTCACTGCCATCTTCATTGGAGCTGT
GGCAGCCATGACTGGGTACTGGTTGTCAGAGCGGAGTGACCGTGTGCTGGAGGGCTTCATCAAGGGTAGA
TAA

Translation (420 aa):
MAPLPPRGLVPSLLWCLSLFLSLPGPVWLQPSPPPHPSPRAEPHPCHTCRALVDNFNKGLERTIRDNFGG
GNTAWEEEKLSKYKDSETRLVEVLEGVCSRSDFECHRLLELSEELVENWWFHRQQEAPDLFQWLCSDSLK
LCCPSGTFGPSCLPCPGGTERPCGGYGQCEGEGTRGGSGHCDCQAGYGGEACGQCGLGYFEAERNSSHLV
CSACFGPCARCTGPEESHCLQCKKGWALHHLKCVDIDECGTEQATCGADQFCVNTEGSYECRDCAKACLG
CMGAGPGRCKKCSRGYQQVGSKCLDVDECETVVCPGENEKCENTEGGYRCVCAEGYRQEDGICVKEQVPE
SAGFFAEMTEDEMVVLQQMFFGVIICALATLAAKGDLVFTAIFIGAVAAMTGYWLSERSDRVLEGFIKGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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