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Report for CCDS56628.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56628.1 Public Mus musculus 1 Stat1 23 108 98 CCDS HistoryNCBI Gene:20846Re-query CCDS DB by CCDS ID:56628.1Re-query CCDS DB by GeneID:20846See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56628.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070968.13 ENSMUSP00000066743.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070968.13Link to Ensembl Protein Viewer:ENSMUSP00000066743.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000070968Re-query CCDS DB by Protein ID:ENSMUSP00000066743
Original member Current member EBI ENSMUST00000186857.6 ENSMUSP00000140875.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000186857.6Link to Ensembl Protein Viewer:ENSMUSP00000140875.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000186857Re-query CCDS DB by Protein ID:ENSMUSP00000140875
Original member Current member NCBI NM_001205314.1 NP_001192243.1 Accepted alive Link to Nucleotide Sequence:NM_001205314.1Link to Protein Sequence:NP_001192243.1Re-query CCDS DB by Nucleotide ID:NM_001205314Re-query CCDS DB by Protein ID:NP_001192243Link to BLAST:NP_001192243.1
Original member Current member NCBI NM_001357627.1 NP_001344556.1 Accepted alive Link to Nucleotide Sequence:NM_001357627.1Link to Protein Sequence:NP_001344556.1Re-query CCDS DB by Nucleotide ID:NM_001357627Re-query CCDS DB by Protein ID:NP_001344556Link to BLAST:NP_001344556.1
Original member Current member NCBI NM_009283.4 NP_033309.3 Accepted alive Link to Nucleotide Sequence:NM_009283.4Link to Protein Sequence:NP_033309.3Re-query CCDS DB by Nucleotide ID:NM_009283Re-query CCDS DB by Protein ID:NP_033309Link to BLAST:NP_033309.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192243.1 749 P42225 749 98.5314% 0 11
NP_001344556.1 749 P42225 749 98.5314% 0 11
NP_033309.3 749 P42225 749 98.5314% 0 11

Chromosomal Locations for CCDS 56628.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 52122594 52122721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52123114 52123258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52126520 52126618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52132544 52132633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52135603 52135681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52136879 52136970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52137279 52137430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52139194 52139352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52140577 52140669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52142901 52142960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52144086 52144115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52144204 52144297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52145150 52145191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52147294 52147377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52147901 52147999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52148903 52149038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52150619 52150668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52151238 52151332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52152233 52152378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52153844 52154029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52154986 52155061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52155983 52156082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 52159283 52159297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2250 nt):
ATGTCACAGTGGTTCGAGCTTCAGCAGCTGGACTCCAAGTTCCTGGAGCAGGTCCACCAGCTGTACGATG
ACAGTTTCCCCATGGAAATCAGACAGTACCTGGCCCAGTGGCTGGAAAAGCAAGACTGGGAGCACGCTGC
CTATGATGTCTCGTTTGCGACCATCCGCTTCCATGACCTCCTCTCACAGCTGGACGACCAGTACAGCCGC
TTTTCTCTGGAGAATAATTTCTTGTTGCAGCACAACATACGGAAAAGCAAGCGTAATCTCCAGGATAACT
TCCAAGAAGATCCCGTACAGATGTCCATGATCATCTACAACTGTCTGAAGGAAGAAAGGAAGATTTTGGA
AAATGCCCAAAGATTTAATCAGGCCCAGGAGGGAAATATTCAGAACACTGTGATGTTAGATAAACAGAAG
GAGCTGGACAGTAAAGTCAGAAATGTGAAGGATCAAGTCATGTGCATAGAGCAGGAAATCAAGACCCTAG
AAGAATTACAAGATGAATATGACTTTAAATGCAAAACCTCTCAGAACAGAGAAGGTGAAGCCAATGGTGT
GGCGAAGAGCGACCAAAAACAGGAACAGCTGCTGCTCCACAAGATGTTTTTAATGCTTGACAATAAGAGA
AAGGAGATAATTCACAAAATCAGAGAGTTGCTGAATTCCATCGAGCTCACTCAGAACACTCTGATTAATG
ACGAGCTCGTGGAGTGGAAGCGAAGGCAGCAGAGCGCCTGCATCGGGGGACCGCCCAACGCCTGCCTGGA
TCAGCTGCAAAGCTGGTTCACCATTGTTGCAGAGACCCTGCAGCAGATCCGTCAGCAGCTTAAAAAGCTG
GAGGAGTTGGAACAGAAATTCACCTATGAGCCCGACCCTATTACAAAAAACAAGCAGGTGTTGTCAGATC
GAACCTTCCTCCTCTTCCAGCAGCTCATTCAGAGCTCCTTCGTGGTAGAACGACAGCCGTGCATGCCCAC
TCACCCGCAGAGGCCCCTGGTCTTGAAGACTGGGGTACAGTTCACTGTCAAGCTGAGACTGTTGGTGAAA
TTGCAAGAGCTGAACTATAACTTGAAAGTGAAAGTCTCATTTGACAAAGATGTGAACGAGAAAAACACAG
TTAAAGGATTTCGGAAGTTCAACATCTTGGGTACGCACACAAAAGTGATGAACATGGAAGAATCCACCAA
CGGAAGTCTGGCAGCTGAGTTCCGACACCTGCAACTGAAGGAACAGAAAAACGCTGGGAACAGAACTAAT
GAGGGGCCTCTCATTGTCACCGAAGAACTTCACTCTCTTAGCTTTGAAACCCAGTTGTGCCAGCCAGGCT
TGGTGATTGACCTGGAGACCACCTCTCTTCCTGTCGTGGTGATCTCCAACGTCAGCCAGCTCCCCAGTGG
CTGGGCGTCTATCCTGTGGTACAACATGCTGGTGACAGAGCCCAGGAATCTCTCCTTCTTCCTGAACCCC
CCGTGCGCGTGGTGGTCCCAGCTCTCAGAGGTGTTGAGTTGGCAGTTTTCATCAGTCACCAAGAGAGGTC
TGAACGCAGACCAGCTGAGCATGCTGGGAGAGAAGCTGCTGGGCCCTAATGCTGGCCCTGATGGTCTTAT
TCCATGGACAAGGTTTTGTAAGGAAAATATTAATGATAAAAATTTCTCCTTCTGGCCTTGGATTGACACC
ATCCTAGAGCTCATTAAGAAGCACCTGCTGTGCCTCTGGAATGATGGGTGCATTATGGGCTTCATCAGCA
AGGAGCGAGAACGCGCTCTGCTCAAGGACCAGCAGCCAGGGACGTTCCTGCTTAGATTCAGTGAGAGCTC
CCGGGAAGGGGCCATCACATTCACATGGGTGGAACGGTCCCAGAACGGAGGTGAACCTGACTTCCATGCC
GTGGAGCCCTACACGAAAAAAGAACTTTCAGCTGTTACTTTCCCAGATATTATTCGCAACTACAAAGTCA
TGGCTGCCGAGAACATACCAGAGAATCCCCTGAAGTATCTGTACCCCAATATTGACAAAGACCACGCCTT
TGGGAAGTATTATTCCAGACCAAAGGAAGCACCAGAACCGATGGAGCTTGACGACCCTAAGCGAACTGGA
TACATCAAGACTGAGTTGATTTCTGTGTCTGAAGTCCACCCTTCTAGACTTCAGACCACAGACAACCTGC
TTCCCATGTCTCCAGAGGAGTTTGATGAGATGTCCCGGATAGTGGGCCCCGAATTTGACAGTATGATGAG
CACAGTATAA

Translation (749 aa):
MSQWFELQQLDSKFLEQVHQLYDDSFPMEIRQYLAQWLEKQDWEHAAYDVSFATIRFHDLLSQLDDQYSR
FSLENNFLLQHNIRKSKRNLQDNFQEDPVQMSMIIYNCLKEERKILENAQRFNQAQEGNIQNTVMLDKQK
ELDSKVRNVKDQVMCIEQEIKTLEELQDEYDFKCKTSQNREGEANGVAKSDQKQEQLLLHKMFLMLDNKR
KEIIHKIRELLNSIELTQNTLINDELVEWKRRQQSACIGGPPNACLDQLQSWFTIVAETLQQIRQQLKKL
EELEQKFTYEPDPITKNKQVLSDRTFLLFQQLIQSSFVVERQPCMPTHPQRPLVLKTGVQFTVKLRLLVK
LQELNYNLKVKVSFDKDVNEKNTVKGFRKFNILGTHTKVMNMEESTNGSLAAEFRHLQLKEQKNAGNRTN
EGPLIVTEELHSLSFETQLCQPGLVIDLETTSLPVVVISNVSQLPSGWASILWYNMLVTEPRNLSFFLNP
PCAWWSQLSEVLSWQFSSVTKRGLNADQLSMLGEKLLGPNAGPDGLIPWTRFCKENINDKNFSFWPWIDT
ILELIKKHLLCLWNDGCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFTWVERSQNGGEPDFHA
VEPYTKKELSAVTFPDIIRNYKVMAAENIPENPLKYLYPNIDKDHAFGKYYSRPKEAPEPMELDDPKRTG
YIKTELISVSEVHPSRLQTTDNLLPMSPEEFDEMSRIVGPEFDSMMSTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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