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Report for CCDS25348.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25348.1 Public Mus musculus 11 Pgap3 23 108 98 CCDS HistoryNCBI Gene:320655Re-query CCDS DB by CCDS ID:25348.1Re-query CCDS DB by GeneID:320655See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25348.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090827.11 ENSMUSP00000088337.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090827.11Link to Ensembl Protein Viewer:ENSMUSP00000088337.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090827Re-query CCDS DB by Protein ID:ENSMUSP00000088337
Original member Current member NCBI NM_001033537.2 NP_001028709.2 Accepted alive Link to Nucleotide Sequence:NM_001033537.2Link to Protein Sequence:NP_001028709.2Re-query CCDS DB by Nucleotide ID:NM_001033537Re-query CCDS DB by Protein ID:NP_001028709Link to BLAST:NP_001028709.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028709.2 320 A2A559-1 320 100% 0 0

Chromosomal Locations for CCDS 25348.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 98390038 98390101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98390287 98390491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98390677 98390813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98391080 98391141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98391695 98391757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98397896 98398048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98398885 98398982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 98400215 98400395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGCCAAGCGGACGGCGCCGCTGCTGCTGCTAACCTTGGCAGTGGGACTCGCGGGGGGTTCCCAGGGCG
ACCGCGAGCCCGTGTACCGCGACTGCGTGCTCCGATGCGAGGAACGGAACTGTTCGGGAGACGCACTGAA
GCACTTCCGCTCCCGCCAGCCAATCTACATGAGCCTAGCTGGCTGGACCTGTCGGGACGACTGCAAGTAT
GAGTGTATGTGGTTCACTGTTGGCCTCTACCTTCAGGAGGGCCACAGAGTGCCTCAGTTCCATGGCAAGT
GGCCCTTCTCCCGGTTCCTGTTCATCCAAGAGCCAGCTTCTGCCGTGGCCTCACTCCTCAATGGCCTGGC
CAGCCTGGTGATGCTCTGCCGCTATCGCGCCTCTGTGCCAGCCTCCTCCCCCATGTACCATACCTGCATG
GCCTTCGCTTGGGTGTCTCTCAATGCTTGGTTCTGGTCCACAGTCTTCCATACCAGGGACACTGACCTCA
CAGAGAAGATGGACTACTTCTGCGCTTCAGCTGTCATCCTGCATTCTGTTTACCTGTGCTGTGTCAGGAC
CGTGGGACTACAGCACCCGTCTGTGGCCAGTGCCTTCGGTGCCCTGCTGCTGCTGCTGCTGACAGGACAC
ATATCCTACCTGAGCCTTGTCCATTTCGACTACGGCTACAACATGATGGCCAACGTGGCTATCGGCCTGG
TGAACCTGGCGTGGTGGCTGGTCTGGTGCCTACGGAACCGCCAGCGCCTCCCTCACACCCGCAGGTGTAT
GGTGGTGGTAGTGCTGCTGCAGGGGCTGTCCCTGCTGGAATTGCTTGACTTCCCGCCCCTCTTCTGGGTC
CTGGACGCCCACGCCATCTGGCACATCAGCACCATCCCGGTCCACACCCTCTTTTTCAGGTTTCTGGAAG
ATGACAGCTTGTACCTACTGAAGGAATCTGGAGCCATGTTCAAGCTGGACTAA

Translation (320 aa):
MAKRTAPLLLLTLAVGLAGGSQGDREPVYRDCVLRCEERNCSGDALKHFRSRQPIYMSLAGWTCRDDCKY
ECMWFTVGLYLQEGHRVPQFHGKWPFSRFLFIQEPASAVASLLNGLASLVMLCRYRASVPASSPMYHTCM
AFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASAVILHSVYLCCVRTVGLQHPSVASAFGALLLLLLTGH
ISYLSLVHFDYGYNMMANVAIGLVNLAWWLVWCLRNRQRLPHTRRCMVVVVLLQGLSLLELLDFPPLFWV
LDAHAIWHISTIPVHTLFFRFLEDDSLYLLKESGAMFKLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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