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Report for CCDS38906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38906.1 Public Mus musculus 4 Zdhhc18 23 108 98 CCDS HistoryNCBI Gene:503610Re-query CCDS DB by CCDS ID:38906.1Re-query CCDS DB by GeneID:503610See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38906.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000084238.4 ENSMUSP00000081260.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000084238.4Link to Ensembl Protein Viewer:ENSMUSP00000081260.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000084238Re-query CCDS DB by Protein ID:ENSMUSP00000081260
Original member Current member NCBI NM_001017968.2 NP_001017968.2 Accepted alive Link to Nucleotide Sequence:NM_001017968.2Link to Protein Sequence:NP_001017968.2Re-query CCDS DB by Nucleotide ID:NM_001017968Re-query CCDS DB by Protein ID:NP_001017968Link to BLAST:NP_001017968.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001017968.2 380 Q5Y5T2 380 100% 0 0

Chromosomal Locations for CCDS 38906.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 133608656 133608773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133610370 133610482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133612923 133613025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133613639 133613687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133613801 133613938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133615180 133615329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133627200 133627360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 133633079 133633389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGAAGGACTGCGAGTACCAGCAGATAAGCCCCGGGGCCGCCCCGCCGCCCGCCTCCCCCGGGGCGCGTC
GCCCCGGCCCCGCCGCGCCCCCTGCTCCAAGCCCCGGGCCCGCGCCTGGCGCGCCGCGCTGGAGCGGCAG
CGGCAGCGGCAGCGGGAGCCTGGGCCGCCGGCCCCGGCGTAAGTGGGAGGTGTTCCCGGGCCGCAACCGC
TTCTACTGCGGAGGCCGGCTCATGCTGGCCGGCCACGGCGGCGTCTTCGCGCTCACGCTGCTGCTCATCC
TCAGCACCACCATCCTCTTCTTCGTCTTCGACTGTCCCTACCTGGCCCGCACACTGACCCTGGCCATTCC
TATCATCGCTGCCATCCTCTTCTTCTTCGTCATGAGCTGTCTCCTGCAGACCAGTTTCACGGACCCTGGC
ATCCTGCCCCGGGCCACCATCTGTGAGGCCGCTGCCCTGGAGAAGCAGATCGATAACACAGGCAGCTCCA
CATACCGACCGCCCCCTCGGACTCGGGAGGTGATGATCAACGGGCAGACAGTGAAACTCAAGTATTGCTT
CACCTGTAAGATGTTTCGGCCTCCCCGGACCTCGCACTGCAGTGTCTGCGACAACTGTGTGGAACGGTTT
GACCATCACTGCCCTTGGGTGGGCAACTGTGTGGGGAGACGGAACTACCGCTTCTTTTATGCGTTTATTC
TCTCCCTCTCCTTCTTGACGGCCTTCATCTTCGCCTGCGTGGTCACCCACCTGACCCTTCTTTCTCAAGG
AAGCAACTTCCTCTCCGCTCTGAAAAAGACACCAGCAAGTGTGCTGGAGTTGGTCATCTGCTTCTTCTCA
ATCTGGTCCATCCTGGGCCTCTCAGGGTTCCACACGTACCTCGTGGCCTCCAACCTGACAACTAACGAAG
ATATCAAAGGGTCTTGGTCCAGCAAGAGGGGTGGCGAGGCCTCTGTCAACCCCTACAGCCATAAAAGTAT
TATCACCAACTGCTGTGCTGTGCTCTGTGGCCCACTGCCTCCCAGCCTGATTGACCGGCGAGGATTCGTG
CAGTCTGATACCGCGTTGCCCTCGCCCATCAGAAGTGATGACCCGGCCTGTGGAGCCAAGCCAGACGCCA
GCATGGTAGGAGGCCACCCCTGA

Translation (380 aa):
MKDCEYQQISPGAAPPPASPGARRPGPAAPPAPSPGPAPGAPRWSGSGSGSGSLGRRPRRKWEVFPGRNR
FYCGGRLMLAGHGGVFALTLLLILSTTILFFVFDCPYLARTLTLAIPIIAAILFFFVMSCLLQTSFTDPG
ILPRATICEAAALEKQIDNTGSSTYRPPPRTREVMINGQTVKLKYCFTCKMFRPPRTSHCSVCDNCVERF
DHHCPWVGNCVGRRNYRFFYAFILSLSFLTAFIFACVVTHLTLLSQGSNFLSALKKTPASVLELVICFFS
IWSILGLSGFHTYLVASNLTTNEDIKGSWSSKRGGEASVNPYSHKSIITNCCAVLCGPLPPSLIDRRGFV
QSDTALPSPIRSDDPACGAKPDASMVGGHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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