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Report for CCDS24910.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24910.1 Public Mus musculus 11 Chrnb1 23 108 98 CCDS HistoryNCBI Gene:11443Re-query CCDS DB by CCDS ID:24910.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24910.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000045971.8 ENSMUSP00000047270.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000045971.8Link to Ensembl Protein Viewer:ENSMUSP00000047270.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000045971Re-query CCDS DB by Protein ID:ENSMUSP00000047270
Original member NCBI NM_009601.4 NP_033731.3 Updated not alive Link to Nucleotide Sequence:NM_009601.4Link to Protein Sequence:NP_033731.3Re-query CCDS DB by Nucleotide ID:NM_009601Re-query CCDS DB by Protein ID:NP_033731
Current member NCBI NM_009601.5 NP_033731.3 Accepted alive Link to Nucleotide Sequence:NM_009601.5Link to Protein Sequence:NP_033731.3Re-query CCDS DB by Nucleotide ID:NM_009601Re-query CCDS DB by Protein ID:NP_033731Link to BLAST:NP_033731.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033731.3 501 P09690 501 100% 0 0

Chromosomal Locations for CCDS 24910.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 69784621 69784761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69785050 69785197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69785707 69785879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69786881 69787104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69792699 69792908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69793465 69793612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69793884 69793992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69794150 69794259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69794969 69795013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69795595 69795734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 69795822 69795879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGCCTTAGGGGCGCTGCTTCTGCTTCTAGGGGTACTCGGGACGCCCCTCGCCCCAGGCGCCCGCGGGT
CGGAAGCCGAAGGCCAACTGATTAAGAAACTTTTCTCCAACTATGATAGCTCGGTGAGGCCGGCGCGGGA
GGTGGGAGACCGCGTCGGGGTCAGCATCGGCCTCACCCTGGCGCAACTCATCAGCCTGAACGAGAAGGAT
GAAGAAATGAGCACAAAGGTGTACTTAGACCTGGAGTGGACCGACTACAGGTTAAGCTGGGACCCCGCAG
AACATGATGGCATCGATTCTCTCCGCATCACTGCTGAATCCGTTTGGCTCCCTGATGTGGTGCTGCTGAA
CAACAATGACGGAAATTTCGACGTTGCCCTGGACATCAATGTTGTGGTATCTTTCGAGGGCTCTGTGCGC
TGGCAACCCCCTGGCCTGTACCGCAGCAGCTGCAGCATCCAGGTCACCTACTTCCCCTTTGACTGGCAGA
ACTGCACCATGGTGTTTAGTTCCTACAGCTATGACAGCTCTGAGGTCAGCCTGAAGACGGGCCTGGATCC
TGAAGGAGAGGAGAGGCAGGAAGTCTACATTCATGAAGGGACCTTCATTGAGAATGGCCAATGGGAGATT
ATCCACAAACCTTCTAGGTTAATCCAACTTCCAGGGGATCAGAGAGGTGGGAAGGAAGGGCATCATGAGG
AAGTTATCTTCTATCTCATTATTCGGCGGAAGCCTCTCTTCTACCTGGTCAACGTCATTGCCCCATGCAT
CCTCATCACGCTCCTGGCCATCTTTGTCTTCTACCTCCCACCAGATGCAGGAGAGAAGATGGGGCTCTCC
ATCTTTGCCCTGCTGACGCTCACTGTGTTCTTGCTGCTGTTGGCCGACAAAGTGCCTGAGACCTCCCTGG
CGGTGCCCATCATTATCAAGTACCTCATGTTTACCATGGTCCTTGTCACCTTCTCCGTTATCCTTAGTGT
TGTGGTCCTCAACCTGCATCATCGCTCACCCCACACCCACCAAATGCCCTTTTGGGTCCGCCAGATCTTC
ATTCACAAGCTCCCTCCATACCTGGGTCTGAAGAGGCCCAAACCCGAGAGAGACCAACTCCCTGAACCAC
ATCACTCTCTTTCTCCAAGAAGTGGCTGGGGCAGAGGAACTGATGAATATTTCATCCGGAAGCCTCCAAG
TGATTTTCTTTTCCCTAAACTTAACAGGTTTCAGCCTGAATCATCTGCCCCGGACCTGCGACGATTTATC
GATGGTCCAACCCGGGCTGTAGGTCTGCCTCAGGAGCTACGAGAGGTCATTTCCTCAATCAGCTACATGG
CCCGACAGCTTCAGGAACAGGAGGACCACGACGCACTGAAGGAGGACTGGCAGTTTGTGGCCATGGTTGT
GGACCGTCTTTTTCTGTGGACATTCATCGTTTTCACAAGCGTCGGGACCCTAGTCATTTTCCTAGATGCC
ACGTACCATTTGCCCCCTCCTGAACCTTTCCCTTGA

Translation (501 aa):
MALGALLLLLGVLGTPLAPGARGSEAEGQLIKKLFSNYDSSVRPAREVGDRVGVSIGLTLAQLISLNEKD
EEMSTKVYLDLEWTDYRLSWDPAEHDGIDSLRITAESVWLPDVVLLNNNDGNFDVALDINVVVSFEGSVR
WQPPGLYRSSCSIQVTYFPFDWQNCTMVFSSYSYDSSEVSLKTGLDPEGEERQEVYIHEGTFIENGQWEI
IHKPSRLIQLPGDQRGGKEGHHEEVIFYLIIRRKPLFYLVNVIAPCILITLLAIFVFYLPPDAGEKMGLS
IFALLTLTVFLLLLADKVPETSLAVPIIIKYLMFTMVLVTFSVILSVVVLNLHHRSPHTHQMPFWVRQIF
IHKLPPYLGLKRPKPERDQLPEPHHSLSPRSGWGRGTDEYFIRKPPSDFLFPKLNRFQPESSAPDLRRFI
DGPTRAVGLPQELREVISSISYMARQLQEQEDHDALKEDWQFVAMVVDRLFLWTFIVFTSVGTLVIFLDA
TYHLPPPEPFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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