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Report for CCDS17515.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17515.1 Public Mus musculus 3 Chrnb2 23 108 98 CCDS HistoryNCBI Gene:11444Re-query CCDS DB by CCDS ID:17515.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17515.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029562.4 ENSMUSP00000029562.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029562.4Link to Ensembl Protein Viewer:ENSMUSP00000029562.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000029562Re-query CCDS DB by Protein ID:ENSMUSP00000029562
Original member Current member NCBI NM_009602.4 NP_033732.2 Accepted alive Link to Nucleotide Sequence:NM_009602.4Link to Protein Sequence:NP_033732.2Re-query CCDS DB by Nucleotide ID:NM_009602Re-query CCDS DB by Protein ID:NP_033732Link to BLAST:NP_033732.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033732.2 501 Q9ERK7 501 100% 0 0

Chromosomal Locations for CCDS 17515.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 89757100 89757270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89760672 89761641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89762399 89762508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89763010 89763054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89763220 89763365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 89764343 89764406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGCCCGGTGCTCCAACTCTATGGCGCTGCTGTTCAGCTTTGGCCTCCTTTGGCTGTGTTCAGGGGTTT
TGGGTACTGACACAGAGGAGCGGCTGGTGGAGCATCTCTTGGATCCTTCCCGCTATAACAAGCTGATCCG
TCCAGCTACTAATGGCTCTGAGCTGGTGACTGTACAGCTCATGGTATCATTGGCACAGCTCATCAGTGTG
CACGAGCGGGAGCAGATCATGACCACCAACGTCTGGCTGACCCAGGAGTGGGAAGATTATCGCCTCACAT
GGAAGCCTGAGGATTTCGACAATATGAAGAAAGTCCGACTCCCTTCTAAGCACATCTGGCTCCCAGATGT
GGTTCTATACAACAATGCTGACGGCATGTACGAAGTCTCCTTCTATTCCAATGCTGTGGTCTCCTATGAT
GGCAGCATCTTTTGGCTACCGCCTGCCATCTACAAGAGCGCATGCAAGATTGAGGTGAAGCACTTCCCAT
TTGACCAGCAGAACTGCACCATGAAGTTCCGCTCCTGGACCTACGACCGCACTGAGATTGACCTGGTGCT
CAAAAGCGATGTGGCCAGCCTGGACGACTTCACACCTAGTGGGGAGTGGGACATCATCGCACTGCCAGGC
CGACGCAACGAGAACCCAGACGACTCCACCTACGTGGACATCACCTACGACTTCATCATTCGTCGCAAAC
CGCTCTTCTACACCATCAACCTCATCATCCCCTGCGTACTCATCACCTCGCTGGCCATCCTGGTCTTCTA
CCTGCCCTCAGACTGTGGTGAAAAGATGACACTTTGTATTTCTGTGCTGCTGGCGCTCACGGTGTTCCTG
CTGCTCATCTCCAAGATTGTGCCTCCCACCTCCCTCGACGTACCGCTGGTGGGAAAGTACCTCATGTTCA
CCATGGTGCTAGTCACCTTCTCCATCGTCACTAGCGTGTGTGTGCTCAATGTGCACCACCGTTCGCCTAC
CACGCACACCATGGCGCCCTGGGTCAAGGTGGTCTTCCTGGAGAAGCTGCCCACCCTCCTCTTCCTGCAG
CAGCCACGCCACCGCTGTGCACGTCAACGCCTGCGCTTGCGAAGGCGCCAGCGGGAACGTGAGGGGGCAG
GCACACTATTCTTCCGCGAAGGTCCTGCAGCTGACCCATGTACCTGCTTTGTCAATCCTGCATCAATGCA
GGGCTTGGCTGGGGCTTTCCAGGCTGAGCCCGCTGCAGCCGGTCTGGGGCGCTCGATGGGCCCATGCAGC
TGTGGCCTCCGGGAAGCTGTGGACGGTGTACGCTTCATTGCGGACCATATGCGAAGTGAAGATGATGACC
AGAGTGTGAGGGAGGATTGGAAATACGTTGCCATGGTGATCGACCGCCTGTTCCTCTGGATCTTTGTCTT
TGTCTGTGTCTTTGGGACCATTGGCATGTTCCTGCAGCCTCTCTTCCAGAACTACACTGCCACGACCTTC
CTTCACTCTGACCACTCAGCTCCCAGCTCCAAGTGA

Translation (501 aa):
MARCSNSMALLFSFGLLWLCSGVLGTDTEERLVEHLLDPSRYNKLIRPATNGSELVTVQLMVSLAQLISV
HEREQIMTTNVWLTQEWEDYRLTWKPEDFDNMKKVRLPSKHIWLPDVVLYNNADGMYEVSFYSNAVVSYD
GSIFWLPPAIYKSACKIEVKHFPFDQQNCTMKFRSWTYDRTEIDLVLKSDVASLDDFTPSGEWDIIALPG
RRNENPDDSTYVDITYDFIIRRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLLALTVFL
LLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHTMAPWVKVVFLEKLPTLLFLQ
QPRHRCARQRLRLRRRQREREGAGTLFFREGPAADPCTCFVNPASMQGLAGAFQAEPAAAGLGRSMGPCS
CGLREAVDGVRFIADHMRSEDDDQSVREDWKYVAMVIDRLFLWIFVFVCVFGTIGMFLQPLFQNYTATTF
LHSDHSAPSSK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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