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Report for CCDS37855.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37855.1 Public Mus musculus 18 Elac1 23 108 98 CCDS HistoryNCBI Gene:114615Re-query CCDS DB by CCDS ID:37855.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37855.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041138.2 ENSMUSP00000041793.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041138.2Link to Ensembl Protein Viewer:ENSMUSP00000041793.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000041138Re-query CCDS DB by Protein ID:ENSMUSP00000041793
Original member Current member NCBI NM_053255.3 NP_444485.2 Accepted alive Link to Nucleotide Sequence:NM_053255.3Link to Protein Sequence:NP_444485.2Re-query CCDS DB by Nucleotide ID:NM_053255Re-query CCDS DB by Protein ID:NP_444485Link to BLAST:NP_444485.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444485.2 362 Q8VEB6-1 362 100% 0 0

Chromosomal Locations for CCDS 37855.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 73738834 73739300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73742337 73742801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 73747167 73747323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGTCTATGGATGTGACCTTTCTTGGGACAGGAGCAGCATATCCATCACCGACCCGTGGCGCCTCTGCGG
TGGTTCTTCGGTGCGAGGGCGAGTGCTGGCTCTTTGACTGTGGGGAGGGAACACAGACCCAGCTTATGAA
AAGCCAGCTTAAAGCAGGGAGAATTACCAAGATCTTCATCACACATCTCCATGGCGACCACTTCTTTGGC
CTTCCAGGCCTCCTCTGTACCATCAGCCTGCAGAGTGGCTCTGTGGTCGCCAGGCAGCCTATTGAGATCT
ACGGCCCCGTCGGGCTTCGGGACTTTATCTGGAGAACCATGGAGCTCTCTCACACGGAGTTGGTGTTTCC
TTACGTGGTTCACGAGCTAGTTCCTACAGCTGACCAGTGTCCTGTAGAAGAACTGAGAGAATTTGCACAC
ATGGATGAAACAGACAGCTCTCCCAAAGGACAAGGACGAACTATCTTGCTAGATGCAGAAGAAAACTCAT
ACTGTCTGGTTGATGACGAGCAGTTTGTGGTAAAAGCATTTCGCCTCTTTCATAGAATTCCATCCTTTGG
CTTTTCAGTTGTGGAAAAGAAGCGTGCAGGTAAACTCAACGCACAGAAGCTGAGAGATCTCGGTGTGCCA
CCAGGTCCTGCCTATGGGAAGCTGAAAAACGGAATTTCTGTTGTTTTGGATAATGGAGTTACAATTTCTC
CCCAAGACGTCTTAAAAAAGCCTATGGTTGGAAGAAAAGTTTGCATCCTGGGTGACTGTTCTGGGGTTGT
GGGTGACGGGGGCGTGAAGCTGTGCTTTGAGGCCGACCTGCTGATCCACGAGGCCACTCTGGATGATTCC
CAGATGGACAAAGCGAGAGAGCACGGCCACAGCACGCCGCAGATGGCAGCGGCGTTTGCAAAGCTGTGCC
GTGCCAAGAGGCTAGTTCTGACCCACTTCAGTCAGAGGTACAAACCAACCGCCTTGGCGAGAGAAGGGGA
GGCAGACGGCATCGCAGAGCTGAGGAAGCAAGCAGAGGCCGTGTTAGAGCTCCAAGAAGTGACTCTAGCA
GAAGATTTTATGGTGATCGGCATTCCGATCAAGAAATGA

Translation (362 aa):
MSMDVTFLGTGAAYPSPTRGASAVVLRCEGECWLFDCGEGTQTQLMKSQLKAGRITKIFITHLHGDHFFG
LPGLLCTISLQSGSVVARQPIEIYGPVGLRDFIWRTMELSHTELVFPYVVHELVPTADQCPVEELREFAH
MDETDSSPKGQGRTILLDAEENSYCLVDDEQFVVKAFRLFHRIPSFGFSVVEKKRAGKLNAQKLRDLGVP
PGPAYGKLKNGISVVLDNGVTISPQDVLKKPMVGRKVCILGDCSGVVGDGGVKLCFEADLLIHEATLDDS
QMDKAREHGHSTPQMAAAFAKLCRAKRLVLTHFSQRYKPTALAREGEADGIAELRKQAEAVLELQEVTLA
EDFMVIGIPIKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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