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Report for CCDS28682.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28682.1 Public Mus musculus 17 Ly6g5c 23 108 98 CCDS HistoryNCBI Gene:114652Re-query CCDS DB by CCDS ID:28682.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28682.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037849.2 ENSMUSP00000039151.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037849.2Link to Ensembl Protein Viewer:ENSMUSP00000039151.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000037849Re-query CCDS DB by Protein ID:ENSMUSP00000039151
Original member Current member NCBI NM_148947.2 NP_683749.1 Accepted alive Link to Nucleotide Sequence:NM_148947.2Link to Protein Sequence:NP_683749.1Re-query CCDS DB by Nucleotide ID:NM_148947Re-query CCDS DB by Protein ID:NP_683749Link to BLAST:NP_683749.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683749.1 149 Q8K1T5 149 100% 0 0

Chromosomal Locations for CCDS 28682.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35108300 35108420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35110667 35110831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35111790 35111953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (450 nt):
ATGCTTTTTATGGCAGGCCCTGCAGCCAGCTGGTCCCTGAGGCCCCTGGGACTCCATGGCGTCCCCCAAG
CCTTGTGTGCTGTCCTCTTAACAGTGCTGGTCATGAAGACCTTGGTTCTCGGTGATACCAAGCTCGAGGA
CCTTCACCCTCAGTCCCTCCCACTAAACAAGTACCTGAATTGCTACCGATGTCTGCTGGAGACCGAAGAG
CTGGGGTGCCTCCTGGGGTCTGACACCTGCCTGACACCTCTGGGCAGCAGCTGTGTCACCCTGCACATAA
AGAACAGCAGCGGTTTTAATGTCATGGTGAGCGACTGCTACAGCAAGGAGCAGATGGTCCATTGTTCATA
TACCCGTGCTTCCCCGGTGTTTGGCTTTTGGATATTCTATCAGTGTTGCTTCCTGGATTTCTGCAACAAT
CCGGACAACAGAAAGAATAGCATGCACTAG

Translation (149 aa):
MLFMAGPAASWSLRPLGLHGVPQALCAVLLTVLVMKTLVLGDTKLEDLHPQSLPLNKYLNCYRCLLETEE
LGCLLGSDTCLTPLGSSCVTLHIKNSSGFNVMVSDCYSKEQMVHCSYTRASPVFGFWIFYQCCFLDFCNN
PDNRKNSMH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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