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Report for CCDS21897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21897.1 Public Mus musculus 7 Tial1 23 108 98 CCDS HistoryNCBI Gene:21843Re-query CCDS DB by CCDS ID:21897.1Re-query CCDS DB by GeneID:21843See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21897.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106226.8 ENSMUSP00000101833.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106226.8Link to Ensembl Protein Viewer:ENSMUSP00000101833.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106226Re-query CCDS DB by Protein ID:ENSMUSP00000101833
Original member Current member NCBI NM_009383.2 NP_033409.1 Accepted alive Link to Nucleotide Sequence:NM_009383.2Link to Protein Sequence:NP_033409.1Re-query CCDS DB by Nucleotide ID:NM_009383Re-query CCDS DB by Protein ID:NP_033409Link to BLAST:NP_033409.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033409.1 392 P70318 392 100% 0 0

Chromosomal Locations for CCDS 21897.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 128442533 128442659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128443807 128443946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128444281 128444404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128444613 128444697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128444812 128444907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128445651 128445759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128446195 128446270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128448121 128448208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128448342 128448396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128448621 128448770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128454936 128455032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 128461125 128461156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGATGGAAGACGACGGACAGCCCCGGACTCTATACGTAGGTAACCTCTCCAGAGATGTGACAGAAGTCC
TTATTCTTCAGTTATTCAGTCAGATCGGACCCTGTAAAAGCTGTAAAATGATAACAGAGCAACCCGATAG
CAGAAGGGTCAACTCTTCTGTTGGATTTTCTGTTTTGCAGCATACAAGCAATGACCCATATTGCTTTGTG
GAATTTTATGAACACAGAGATGCAGCTGCTGCATTAGCTGCTATGAATGGGAGAAAAATTTTGGGAAAGG
AGGTCAAAGTAAACTGGGCAACAACACCAAGTAGCCAGAAAAAAGATACTTCCAATCACTTCCATGTGTT
TGTTGGGGATTTGAGTCCAGAAATTACAACAGAAGATATCAAATCAGCATTTGCCCCCTTTGGTAAAATA
TCGGATGCCCGGGTAGTTAAAGACATGGCAACTGGAAAGTCCAAAGGCTATGGTTTTGTATCTTTTTATA
ACAAACTGGATGCAGAGAATGCAATTGTGCATATGGGGGGTCAGTGGTTGGGAGGTCGACAAATCAGAAC
CAATTGGGCCACACGTAAACCACCTGCCCCTAAAAGTACACAAGAAACTAACACTAAGCAGTTGAGATTT
GAAGATGTAGTAAACCAGTCAAGTCCAAAAAACTGTACTGTGTACTGTGGAGGAATTGCTTCGGGGCTGA
CAGATCAACTTATGAGACAAACATTTTCACCATTTGGACAAATTATGGAAATACGAGTTTTTCCAGAGAA
GGGCTATTCGTTTGTCAGATTTTCCACTCACGAGAGTGCGGCCCACGCCATTGTCTCTGTGAACGGCACT
ACAATCGAAGGACATGTGGTGAAATGCTATTGGGGTAAAGAATCTCCTGATATGACTAAAAACTTCCAAC
AGGTTGACTACAGTCAGTGGGGCCAGTGGAGCCAAGTGTATGGAAACCCACAACAGTATGGACAGTATAT
GGCAAATGGGTGGCAAGTACCACCCTATGGAGTATATGGGCAGCCGTGGAACCAACAAGGATTTGGAGTA
GATCAATCCCCTTCTGCTGCTTGGATGGGTGGATTTGGTGCTCAGCCTCCTCAAGGACAAGCCCCTCCCC
CTGTAATACCTCCTCCAAACCAAGCTGGGTATGGAATGGCAAGCTTCCCGACACAGTGA

Translation (392 aa):
MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDPYCFV
EFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKI
SDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRF
EDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGT
TIEGHVVKCYWGKESPDMTKNFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVPPYGVYGQPWNQQGFGV
DQSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGMASFPTQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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