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Report for CCDS18196.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18196.1 Public Mus musculus 4 Actl7b 23 108 98 CCDS HistoryNCBI Gene:11471Re-query CCDS DB by CCDS ID:18196.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18196.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095080.4 ENSMUSP00000092693.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095080.4Link to Ensembl Protein Viewer:ENSMUSP00000092693.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000095080Re-query CCDS DB by Protein ID:ENSMUSP00000092693
Original member Current member NCBI NM_025271.2 NP_079547.2 Accepted alive Link to Nucleotide Sequence:NM_025271.2Link to Protein Sequence:NP_079547.2Re-query CCDS DB by Nucleotide ID:NM_025271Re-query CCDS DB by Protein ID:NP_079547Link to BLAST:NP_079547.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079547.2 418 Q9QY83 418 100% 0 0

Chromosomal Locations for CCDS 18196.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 56740100 56741356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGCGACAAAGAACAGCCCTAGCCCTAAGCCCATGGGCACAGCCCAGGGCGACCCTGGAGAGGCAGGAA
CACTGCCAGCACCCGAGGCTGCTGGCATCCGGGACACAGGTTCCACTCAACTGAAGACAAAACCCAAGAA
AATACGGAAGATCAAGGCGCTGGTCATTGACCTGGGTTCCCAGTACTGTAAGTGCGGCTATGCAGGAGAG
CCGAGGCCCACCTATTTCATCTCCTCTACCGTGGGCAAGCGCAGCGCTGAGATGGCTGCGGATGCTGGAG
ACAACTTCAAGGAGACATACGTAGGCCATGAGCTGCTCAACATGGAGGCATCTCTGAAGCTGGTTAACCC
ACTGAAGCACGGAGTTGTGGTGGACTGGGATTGTATCCAGAACATCTGGGAGTACATCTTCCACACCGCT
ATGAAGATCATGCCGGAAGAGCATGCGGTGCTGGTGTCCGACCCTCCGCTCAGCCCCACCAGCAACCGGG
AGAAGTACGCTGAGCTCCTGTTCGAGACCTTCGGCATCCCTGCCATGCATGTGACCTCCCAGGCGCTGCT
GTCCATCTACTCATATGGCAAGACCTCCGGCTTGGTGGTGGAGAGCGGACACGGCGTGTCGCATGTGGTG
CCCATCTCTGAAGGGGACCTGCTGCCGGGCCTGCCCAGCCGTGTAGACTATGCGGGCTGCGACCTCACCA
ACTACCTCATGCAGCTACTCAATGAGGCAGGCCACAAGTTTTCAGACGACCACCTGCACATCATAGAACA
CATCAAGAAGAAGTGCTGCTATGCTGCGCTGCTGCCCGAGGAGGAGATGAGCCTGGGCCTAGACGAGCTG
CATGTGGACTACGAGCTCCCAGATGGGAAGATCATCACCATCGGCCAGGAGCGCTTCCGCTGCTCTGAGA
TGCTCTTCAAGCCCTCCCTGGTGGGTTGCACCCAACCTGGCCTCCCCGAGCTCACGGCGACCTGCCTGGC
CCGCTGCCAGGGCACTGGCTTCAAGGAGGAGATGGCTGCTAACGTGCTGCTGTGCGGTGGCTGCACCATG
CTGGATGGTTTCCCCGAGCGTTTCCAGAGGGAGTTGAGTCTCCTCTGCCCAGGAGACAGCCCCACGGTGG
CCGCTGCTCCCGAGAGGAAGACATCAGTGTGGACCGGCGGCTCCATCCTGGCCTCCTTGCAAGCCTTCCA
GCAGCTTTGGGTCAGCAAAGAAGAGTTTGAGGAGCGGGGCTGTGCAGCCATCTACAGCAAGTGCTAA

Translation (418 aa):
MATKNSPSPKPMGTAQGDPGEAGTLPAPEAAGIRDTGSTQLKTKPKKIRKIKALVIDLGSQYCKCGYAGE
PRPTYFISSTVGKRSAEMAADAGDNFKETYVGHELLNMEASLKLVNPLKHGVVVDWDCIQNIWEYIFHTA
MKIMPEEHAVLVSDPPLSPTSNREKYAELLFETFGIPAMHVTSQALLSIYSYGKTSGLVVESGHGVSHVV
PISEGDLLPGLPSRVDYAGCDLTNYLMQLLNEAGHKFSDDHLHIIEHIKKKCCYAALLPEEEMSLGLDEL
HVDYELPDGKIITIGQERFRCSEMLFKPSLVGCTQPGLPELTATCLARCQGTGFKEEMAANVLLCGGCTM
LDGFPERFQRELSLLCPGDSPTVAAAPERKTSVWTGGSILASLQAFQQLWVSKEEFEERGCAAIYSKC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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