NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS27051.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27051.1 Public Mus musculus 14 Supt16 23 108 98 CCDS HistoryNCBI Gene:114741Re-query CCDS DB by CCDS ID:27051.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27051.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000046709.8 ENSMUSP00000042283.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000046709.8Link to Ensembl Protein Viewer:ENSMUSP00000042283.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000046709Re-query CCDS DB by Protein ID:ENSMUSP00000042283
Original member Current member NCBI NM_033618.3 NP_291096.2 Accepted alive Link to Nucleotide Sequence:NM_033618.3Link to Protein Sequence:NP_291096.2Re-query CCDS DB by Nucleotide ID:NM_033618Re-query CCDS DB by Protein ID:NP_291096Link to BLAST:NP_291096.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_291096.2 1047 Q920B9 1047 99.9045% 0 1

Chromosomal Locations for CCDS 27051.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 52161677 52161822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52162687 52162764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52163184 52163313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52164422 52164551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52170827 52170996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52171426 52171501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52172038 52172150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52172448 52172573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52173471 52173589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52173777 52173903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52173996 52174131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52175242 52175369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52176360 52176513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52176610 52176725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52176949 52177044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52177155 52177220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52178044 52178156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52178284 52178357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52179474 52179564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52180101 52180273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52181017 52181168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52181537 52181683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52182157 52182309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52183012 52183182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52183928 52184020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 52197085 52197150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3144 nt):
ATGGCTGTGACTCTGGACAAAGACGCGTACTACCGGCGAGTGAAGAGATTGTACAGTAACTGGCGGAAAG
GAGAAGATGAGTATGCCAGTATTGATGCCATTGTTGTATCGGTGGGTGTTGATGAAGAAATTGTGTATGC
CAAGTCAACTGCCTTACAGACGTGGCTCTTTGGTTATGAACTAACTGATACAATCATGGTCTTCTGTGAT
GACAAAATCATCTTCATGGCCAGCAAAAAGAAGGTGGAGTTTCTGAAACAGATTGCCAATACTAAAGGCA
ATGAGAATGCTAATGGAGCCCCTGCCATCACACTGCTTGTCAGAGAGAAGAATGAAAGTAACAAGAGCAG
CTTTGACAAAATGATTGACGCTATCAAAGAAAGCAAGAGCGGCAAGAAGATCGGAGTGTTCAGCAAAGAC
AAGTTCCCTGGAGAGTTCATGAAGAGCTGGAGTGATTGTCTCAACAAGGAGGGCTTTGACAAAGTAGACA
TCAGCGCTGTTGTGGCATACACCATTGCTGTGAAAGAGGACGGTGAGCTCAACCTGATGAAGAAAGCAGC
CAGCATCACCTCTGAGGTCTTCAACAAGTTCTTTAAGGAAAGAGTCATGGAAATAGTGGATGCAGATGAG
AAAGTTCGGCATAGCAAATTGGCTGAGTCTGTGGAAAAGGCCATTGAAGAAAAAAAATACCTAGCTGGGG
CAGATCCTTCTACTGTGGAAATGTGTTACCCTCCTATCATTCAGAGTGGTGGCAACTATAATCTCAAGTT
CAGTGTGGTGAGTGATAAGAATCATATGCATTTTGGGGCCATTACGTGTGCCATGGGCATTCGCTTTAAA
TCTTACTGCTCCAACCTTGTTCGCACTCTGATGGTTGACCCCACTCAGGAAGTTCAAGAAAATTACAACT
TTTTACTTCAACTTCAAGAGGAGTTGCTAAAGGAATTAAGACATGGTGTGAAGATATGTGATGTGTATAA
CTCTGTCATGGATGTGGTTAAGAAGCAGAAACCAGAATTGCTGAACAAAATTACAAAGAATCTAGGATTT
GGGATGGGAATTGAATTCCGTGAAGGCTCTCTAGTAATCAATAGTAAAAATCAGTACAAGCTAAAGAAAG
GGATGGTTTTTAGCATCAATCTAGGATTTTCAGACCTGACTAACAAAGAAGGGAAAAAGCCAGAAGAGAA
AACCTATGCCCTGTTCATTGGTGACACGGTGCTTGTAGATGAGGATGGTCCAGCCACTATTCTTACTTCT
GTGAAAAAGAAAGTAAAGAATGTGGGGATTTTCCTGAAGAATGAGGATGATGAAGAGGAGGAGGAAGAGA
AAGATGAGGCAGAGGACCTTTTGGGAAGAGGCTCTAGGGCGGCATTACTTACTGAAAGAACAAGGAATGA
GATGACTGCAGAAGAGAAGCGAAGAGCACATCAGAAGGAACTGGCAGCACAGCTCAACGAGGAAGCGAAG
AGGAGGCTGACAGAGCAGAAAGGGGAACAGCAGATTCAGAAAGCTCGAAAATCTAATGTGTCCTATAAAA
ACCCATCTCTGATGCCTAAGGAACCACATATTCGGGAGATGAAGATCTATATTGATAAGAAATATGAGAC
TGTGATAATGCCTGTGTTTGGCATTGCCACACCCTTCCATATTGCCACAATCAAGAACATAAGTATGTCT
GTCGAAGGAGACTATACTTACTTGCGAATCAACTTCTATTGTCCAGGCAGTGCTCTGGGCAGGAATGAGG
GCAACATCTTTCCTAACCCTGAAGCCACTTTTGTCAAGGAAATTACATACCGAGCTTCAAATATGAAAGC
ACCTGGAGAGCAGACTGTACCCGCCTTAAATCTTCAGAATGCGTTCCGAATTATAAAAGAAGTACAAAAA
CGTTACAAGACCAGAGAAGCTGAAGAGAAAGAAAAAGAGGGCATTGTAAAACAAGACTCGCTGGTGATCA
ACCTAAACCGGAGTAATCCAAAACTGAAAGACCTGTACATTCGTCCAAACATTGCCCAGAAGAGAATGCA
GGGCTCACTGGAGGCTCATGTCAATGGTTTCCGATTCACATCTGTTCGAGGAGACAAGGTGGATATTCTG
TACAATAATATCAAGCATGCGCTGTTCCAGCCCTGTGATGGCGAGATGATTATTGTTTTGCACTTTCACC
TCAAGAATGCTATCATGTTTGGGAAGAAGCGACACACAGATGTACAGTTCTACACAGAAGTTGGAGAGAT
CACTACAGATTTGGGGAAACATCAACACATGCATGACCGAGATGACCTGTATGCTGAGCAGATGGAACGA
GAAATGAGACACAAACTGAAAACGGCCTTTAAAAATTTCATTGAAAAAGTAGAGGCCCTAACAAAGGAGG
AGCTGGAGTTTGAAGTGCCATTTAGGGACCTGGGGTTTAATGGGGCTCCCTACAGGAGTACCTGCCTCCT
TCAGCCCACTAGTAGTGCCCTGGTAAATGCTACAGAGTGGCCACCCTTTGTGGTGACACTGGATGAAGTG
GAGCTGATCCATTTTGAGAGGGTCCAGTTTCACCTGAAGAACTTTGATATGGTCATTGTCTACAAGGATT
ACAGCAAGAAAGTCACGATGATCAATGCTATTCCTGTTGCCTCTCTAGACCCCATCAAGGAGTGGCTGAA
TTCCTGTGACCTAAAGTACACAGAAGGAGTTCAGTCTCTCAACTGGACTAAAATCATGAAGACCATTGTT
GATGACCCCGAGGGCTTCTTTGAACAAGGTGGCTGGTCCTTCCTGGAACCTGAGGGTGAGGGGAGTGACG
CTGAGGACGGAGACTCGGAGTCTGAAATTGAAGATGAGACTTTCAATCCTTCTGAAGATGACTATGAAGA
GGAAGAAGAGGACAGCGATGAAGATTACTCATCAGAAGCTGAAGAATCAGACTATTCTAAGGAATCTCTG
GGAAGTGAAGAAGAAAGCGGGAAGGACTGGGATGAGCTAGAAGAAGAAGCACGAAAAGCGGACCGGGAAA
GCCGTTATGAGGAGGAAGAAGAACAGAGCCGAAGTATGAGCCGGAAGAGGAAGGCATCTGTACATAGTTC
AGGCCGTGGCTCTAACCGTGGTTCCAGACACAGCTCTGCACCCCCGAAGAAAAAGAGAAAGTAA

Translation (1047 aa):
MAVTLDKDAYYRRVKRLYSNWRKGEDEYASIDAIVVSVGVDEEIVYAKSTALQTWLFGYELTDTIMVFCD
DKIIFMASKKKVEFLKQIANTKGNENANGAPAITLLVREKNESNKSSFDKMIDAIKESKSGKKIGVFSKD
KFPGEFMKSWSDCLNKEGFDKVDISAVVAYTIAVKEDGELNLMKKAASITSEVFNKFFKERVMEIVDADE
KVRHSKLAESVEKAIEEKKYLAGADPSTVEMCYPPIIQSGGNYNLKFSVVSDKNHMHFGAITCAMGIRFK
SYCSNLVRTLMVDPTQEVQENYNFLLQLQEELLKELRHGVKICDVYNSVMDVVKKQKPELLNKITKNLGF
GMGIEFREGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATILTS
VKKKVKNVGIFLKNEDDEEEEEEKDEAEDLLGRGSRAALLTERTRNEMTAEEKRRAHQKELAAQLNEEAK
RRLTEQKGEQQIQKARKSNVSYKNPSLMPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMS
VEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITYRASNMKAPGEQTVPALNLQNAFRIIKEVQK
RYKTREAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDIL
YNNIKHALFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMER
EMRHKLKTAFKNFIEKVEALTKEELEFEVPFRDLGFNGAPYRSTCLLQPTSSALVNATEWPPFVVTLDEV
ELIHFERVQFHLKNFDMVIVYKDYSKKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIV
DDPEGFFEQGGWSFLEPEGEGSDAEDGDSESEIEDETFNPSEDDYEEEEEDSDEDYSSEAEESDYSKESL
GSEEESGKDWDELEEEARKADRESRYEEEEEQSRSMSRKRKASVHSSGRGSNRGSRHSSAPPKKKRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH