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Report for CCDS34893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34893.1 Public Homo sapiens 8 XKR4 24 110 108 CCDS HistoryNCBI Gene:114786Re-query CCDS DB by CCDS ID:34893.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34893.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327381.7 ENSP00000328326.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327381.7Link to Ensembl Protein Viewer:ENSP00000328326.5Re-query CCDS DB by Nucleotide ID:ENST00000327381Re-query CCDS DB by Protein ID:ENSP00000328326
Original member Current member NCBI NM_052898.2 NP_443130.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052898.2Link to Protein Sequence:NP_443130.1Re-query CCDS DB by Nucleotide ID:NM_052898Re-query CCDS DB by Protein ID:NP_443130Link to BLAST:NP_443130.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443130.1 650 Q5GH76 650 100% 0 0

Chromosomal Locations for CCDS 34893.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 55102489 55103294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55357678 55357877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 55523281 55524227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1953 nt):
ATGGCCGCTAAATCAGACGGGAGGCTGAAAATGAAGAAAAGCAGCGACGTGGCGTTCACCCCGCTGCAGA
ACTCGGACCACTCGGGCTCGGTGCAGGGATTGGCTCCAGGCTTGCCGTCGGGGTCGGGAGCCGAGGACGA
GGAGGCGGCCGGGGGCGGCTGCTGCCCGGACGGCGGCGGCTGCTCGCGCTGCTGCTGCTGCTGCGCCGGG
AGTGGCGGCTCCGCGGGCTCGGGCGGCTCCGGCGGCGTCGCCGGCCCGGGCGGCGGCGGGGCGGGCTCGG
CTGCGCTGTGCCTGCGCCTGGGCAGGGAGCAGCGGCGCTACTCACTGTGGGACTGCCTCTGGATCCTGGC
CGCCGTGGCCGTGTACTTCGCGGACGTGGGCACAGACGTCTGGCTCGCCGTGGACTACTACCTGCGCGGC
CAGCGCTGGTGGTTCGGGCTCACGCTCTTCTTCGTGGTGCTCGGCTCTCTGTCGGTGCAAGTGTTCAGCT
TCCGCTGGTTTGTGCACGATTTCAGCACCGAGGACAGCGCCACGGCCGCTGCTGCCTCCAGCTGCCCGCA
GCCTGGAGCCGATTGCAAGACGGTGGTCGGCGGTGGGTCTGCAGCCGGGGAAGGCGAGGCTCGTCCTTCC
ACGCCGCAAAGGCAAGCATCTAACGCCAGCAAGAGCAACATCGCCGCGGCCAACAGCGGCAGCAACAGCA
GCGGGGCTACCCGGGCCAGTGGCAAGCACAGGTCTGCGTCCTGCTCCTTCTGCATCTGGCTCCTGCAGTC
ACTCATCCACATCTTGCAGCTCGGGCAAATCTGGAGATATTTCCACACAATATACTTAGGTATTCGAAGC
CGACAGAGTGGGGAGAATGACAGATGGAGGTTTTACTGGAAAATGGTATATGAGTATGCGGATGTGAGTA
TGCTGCATTTGCTAGCCACCTTTCTGGAAAGTGCTCCACAGCTGGTCCTGCAGCTCTGCATTATCGTACA
GACTCATAGCTTACAGGCCCTCCAAGGTTTCACAGCGGCAGCTTCCCTCGTGTCCCTGGCCTGGGCCTTG
GCCTCCTACCAGAAGGCCCTCCGGGACTCTCGAGATGACAAGAAGCCCATCAGCTACATGGCCGTCATCA
TCCAGTTCTGCTGGCACTTCTTCACCATCGCCGCCAGGGTCATCACGTTTGCCCTCTTTGCCTCGGTTTT
CCAGCTGTACTTTGGGATCTTCATCGTCCTTCACTGGTGCATCATGACCTTCTGGATCGTCCACTGTGAG
ACAGAATTCTGTATCACCAAATGGGAAGAGATTGTGTTCGACATGGTGGTGGGGATTATCTATATCTTCA
GTTGGTTCAATGTCAAGGAAGGCAGGACACGCTGCAGGCTATTCATTTACTATTTTGTGATCCTTTTGGA
AAATACAGCCTTGAGTGCCCTCTGGTACCTCTACAAGGCTCCCCAGATTGCAGACGCATTTGCCATTCCA
GCGCTGTGTGTGGTGTTCAGCAGCTTTTTAACTGGCGTTGTTTTTATGCTGATGTATTATGCCTTCTTTC
ATCCCAATGGACCCAGATTCGGGCAGTCACCAAGTTGTGCTTGTGAGGACCCAGCCGCTGCCTTCACTTT
GCCCCCAGACGTGGCCACAAGCACCCTACGGTCCATCTCCAACAACCGCAGTGTTGTCAGCGACCGCGAT
CAGAAATTCGCAGAGCGGGATGGGTGTGTACCTGTCTTTCAAGTGAGGCCCACTGCCCCATCCACCCCAT
CATCTCGCCCACCACGGATTGAAGAATCAGTCATTAAAATTGACTTGTTCAGGAATAGGTACCCAGCATG
GGAGAGACATGTTTTGGACCGAAGCCTCCGAAAGGCTATTTTAGCTTTTGAATGTTCCCCATCTCCTCCA
AGGCTGCAGTACAAAGATGATGCCCTTATTCAGGAGCGGTTGGAGTACGAAACCACTTTATAA

Translation (650 aa):
MAAKSDGRLKMKKSSDVAFTPLQNSDHSGSVQGLAPGLPSGSGAEDEEAAGGGCCPDGGGCSRCCCCCAG
SGGSAGSGGSGGVAGPGGGGAGSAALCLRLGREQRRYSLWDCLWILAAVAVYFADVGTDVWLAVDYYLRG
QRWWFGLTLFFVVLGSLSVQVFSFRWFVHDFSTEDSATAAAASSCPQPGADCKTVVGGGSAAGEGEARPS
TPQRQASNASKSNIAAANSGSNSSGATRASGKHRSASCSFCIWLLQSLIHILQLGQIWRYFHTIYLGIRS
RQSGENDRWRFYWKMVYEYADVSMLHLLATFLESAPQLVLQLCIIVQTHSLQALQGFTAAASLVSLAWAL
ASYQKALRDSRDDKKPISYMAVIIQFCWHFFTIAARVITFALFASVFQLYFGIFIVLHWCIMTFWIVHCE
TEFCITKWEEIVFDMVVGIIYIFSWFNVKEGRTRCRLFIYYFVILLENTALSALWYLYKAPQIADAFAIP
ALCVVFSSFLTGVVFMLMYYAFFHPNGPRFGQSPSCACEDPAAAFTLPPDVATSTLRSISNNRSVVSDRD
QKFAERDGCVPVFQVRPTAPSTPSSRPPRIEESVIKIDLFRNRYPAWERHVLDRSLRKAILAFECSPSPP
RLQYKDDALIQERLEYETTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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