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Report for CCDS5140.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5140.1 Public Homo sapiens 6 TMEM200A 24 110 108 CCDS HistoryNCBI Gene:114801Re-query CCDS DB by CCDS ID:5140.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5140.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296978.4 ENSP00000296978.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296978.4Link to Ensembl Protein Viewer:ENSP00000296978.3Re-query CCDS DB by Nucleotide ID:ENST00000296978Re-query CCDS DB by Protein ID:ENSP00000296978
Original member Current member EBI ENST00000392429.1 ENSP00000376224.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392429.1Link to Ensembl Protein Viewer:ENSP00000376224.1Re-query CCDS DB by Nucleotide ID:ENST00000392429Re-query CCDS DB by Protein ID:ENSP00000376224
Original member Current member EBI ENST00000545622.5 ENSP00000438928.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000545622.5Link to Ensembl Protein Viewer:ENSP00000438928.1Re-query CCDS DB by Nucleotide ID:ENST00000545622Re-query CCDS DB by Protein ID:ENSP00000438928
Original member Current member EBI ENST00000617887.4 ENSP00000480294.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617887.4Link to Ensembl Protein Viewer:ENSP00000480294.1Re-query CCDS DB by Nucleotide ID:ENST00000617887Re-query CCDS DB by Protein ID:ENSP00000480294
Original member Current member NCBI NM_001258276.2 NP_001245205.1 Accepted alive Link to Nucleotide Sequence:NM_001258276.2Link to Protein Sequence:NP_001245205.1Re-query CCDS DB by Nucleotide ID:NM_001258276Re-query CCDS DB by Protein ID:NP_001245205Link to BLAST:NP_001245205.1
Original member Current member NCBI NM_001258277.2 NP_001245206.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001258277.2Link to Protein Sequence:NP_001245206.1Re-query CCDS DB by Nucleotide ID:NM_001258277Re-query CCDS DB by Protein ID:NP_001245206Link to BLAST:NP_001245206.1
Original member Current member NCBI NM_001258278.2 NP_001245207.1 Accepted alive Link to Nucleotide Sequence:NM_001258278.2Link to Protein Sequence:NP_001245207.1Re-query CCDS DB by Nucleotide ID:NM_001258278Re-query CCDS DB by Protein ID:NP_001245207Link to BLAST:NP_001245207.1
Original member Current member NCBI NM_052913.3 NP_443145.1 Accepted alive Link to Nucleotide Sequence:NM_052913.3Link to Protein Sequence:NP_443145.1Re-query CCDS DB by Nucleotide ID:NM_052913Re-query CCDS DB by Protein ID:NP_443145Link to BLAST:NP_443145.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001245205.1 491 Q86VY9 491 100% 0 0
NP_001245206.1 491 Q86VY9 491 100% 0 0
NP_001245207.1 491 Q86VY9 491 100% 0 0
NP_443145.1 491 Q86VY9 491 100% 0 0

Chromosomal Locations for CCDS 5140.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 130440423 130441898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1476 nt):
ATGATAGCAACTGGTGGAGTGATAACTGGCCTGGCCGCCTTGAAAAGGCAAGACTCTGCCAGATCACAGC
AGCATGTCAACCTCAGCCCGTCTCCTGCTACCCAAGAGAAGAAGCCCATCAGGCGCCGGCCCCGGGCAGA
TGTTGTGGTTGTTCGTGGCAAAATCCGGCTTTATTCCCCATCTGGTTTTTTTCTTATTTTAGGAGTGCTC
ATCTCCATTATAGGAATTGCTATGGCCGTTCTTGGATATTGGCCCCAAAAAGAACATTTTATTGATGCTG
AAACAACACTGTCAACAAATGAAACTCAGGTCATTCGGAATGAAGGCGGTGTGGTGGTTCGCTTCTTTGA
GCAGCATTTGCATTCTGATAAGATGAAAATGCTTGGCCCATTCACCATGGGGATTGGCATTTTCATTTTC
ATTTGTGCTAATGCCATTCTTCATGAAAACCGTGACAAAGAGACCAAAATCATACACATGAGGGATATCT
ATTCCACAGTCATTGACATTCACACGCTAAGAATCAAGGAGCAAAGGCAAATGAACGGCATGTACACTGG
TTTGATGGGAGAAACAGAAGTAAAACAGAATGGGAGCTCCTGTGCCTCGAGATTGGCAGCAAATACGATC
GCCTCTTTCTCGGGTTTTCGGAGCAGTTTTCGAATGGACAGCTCCGTGGAGGAGGATGAACTTATGTTAA
ATGAAGGTAAGAGTTCTGGGCATCTTATGCCCCCTTTGCTCTCTGACAGCTCTGTGTCTGTCTTTGGCCT
CTATCCACCTCCTTCCAAGACAACTGATGATAAGACCAGCGGCTCTAAGAAATGTGAAACCAAGTCAATT
GTGTCATCGTCCATCAGTGCTTTTACATTGCCTGTGATCAAACTTAATAACTGTGTTATTGATGAGCCCA
GTATAGATAACATCACTGAAGATGCTGACAACCTCAAAAGTAGGTCAAGGAATTTGTCAATGGATTCCCT
TGTGGTTCCTTTGCCCAACACCAGTGAATCCTTCCAGCCCGTCAGCACAGTGCTACCAAGGAATAATTCC
ATTGGGGAGTCGTTGTCGAGTCAGTACAAGTCATCTATGGCTCTCGGACCTGGGGCTGGACAGCTCTTGT
CTCCTGGGGCTGCCAGAAGACAGTTTGGGTCCAATACATCCTTGCATTTGCTCTCGTCACACTCAAAGTC
CTTGGACTTAGACCGGGGTCCCTCCACTCTAACTGTTCAGGCAGAACAACGGAAACATCCAAGTTGGCCT
AGGTTGGATCGGAACAACAGCAAGGGATATATGAAACTAGAGAACAAAGAAGACCCGATGGATAGGTTGC
TTGTGCCCCAAGTTGCCATCAAAAAGGACTTTACCAATAAGGAGAAGCTTCTTATGATTTCAAGATCTCA
CAATAATTTGAGTTTTGAACATGATGAGTTTTTGAGTAACAACCTAAAGAGGGGAACTTCTGAAACAAGG
TTTTAA

Translation (491 aa):
MIATGGVITGLAALKRQDSARSQQHVNLSPSPATQEKKPIRRRPRADVVVVRGKIRLYSPSGFFLILGVL
ISIIGIAMAVLGYWPQKEHFIDAETTLSTNETQVIRNEGGVVVRFFEQHLHSDKMKMLGPFTMGIGIFIF
ICANAILHENRDKETKIIHMRDIYSTVIDIHTLRIKEQRQMNGMYTGLMGETEVKQNGSSCASRLAANTI
ASFSGFRSSFRMDSSVEEDELMLNEGKSSGHLMPPLLSDSSVSVFGLYPPPSKTTDDKTSGSKKCETKSI
VSSSISAFTLPVIKLNNCVIDEPSIDNITEDADNLKSRSRNLSMDSLVVPLPNTSESFQPVSTVLPRNNS
IGESLSSQYKSSMALGPGAGQLLSPGAARRQFGSNTSLHLLSSHSKSLDLDRGPSTLTVQAEQRKHPSWP
RLDRNNSKGYMKLENKEDPMDRLLVPQVAIKKDFTNKEKLLMISRSHNNLSFEHDEFLSNNLKRGTSETR
F


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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