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Report for CCDS24571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24571.1 Public Mus musculus 11 Adam19 23 108 98 CCDS HistoryNCBI Gene:11492Re-query CCDS DB by CCDS ID:24571.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000011400.7 ENSMUSP00000011400.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000011400.7Link to Ensembl Protein Viewer:ENSMUSP00000011400.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000011400Re-query CCDS DB by Protein ID:ENSMUSP00000011400
Original member Current member NCBI NM_009616.4 NP_033746.1 Accepted alive Link to Nucleotide Sequence:NM_009616.4Link to Protein Sequence:NP_033746.1Re-query CCDS DB by Nucleotide ID:NM_009616Re-query CCDS DB by Protein ID:NP_033746Link to BLAST:NP_033746.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033746.1 920 O35674 920 100% 0 0

Chromosomal Locations for CCDS 24571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46056114 46056210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46060923 46061008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46065012 46065082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46093863 46093941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46099853 46099929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46112757 46112949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46113623 46113688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46118420 46118491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46121420 46121586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46123093 46123177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46125008 46125147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46127246 46127423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46128786 46128875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46131623 46131818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46134428 46134536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46136248 46136461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46137364 46137441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46137540 46137648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46138837 46138975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46139693 46139777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46140006 46140230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46142919 46143071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46143792 46143845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2763 nt):
ATGCCCGGGCGCGCGGGCGTCGCCCGGTTCTGCTTGCTGGCTCTCGCTCTGCAGCTACATTGGCCGCTGG
CGGCGTGCGAGCCGGGATGGACCACAAGAGGAAGCCAAGAAGGTAGCCCTCCGCTACAGCATGAACTCAT
AATACCTCAGTGGCGGACTTCAGAAAGCCCTGGGAGAGGAAAGCATCCACTCAGAGCAGAGCTCAGGGTC
ATGGCTGAAGGGCGAGAGCTGATCCTAGACCTGGAGAAGAACGAGCACCTTTTTGCTCCAGCCTACACAG
AAACCTGCTACACTGCAAGTGGCAATCCTCAAACCAGCACGCTGAAGTCTGAGGATCACTGCTTTTACCA
CGGGACTGTGAGGGACGTGGATGAGTCCAGTGTCACGCTCAGCACCTGCCGGGGAATTAGAGGACTGATT
ATAGTGAGAAGTAACCTCAGCTACATCATCGAGCCCGTCCCTAACAGCGACAGCCAACACCGTATTTACA
GATCCGAACATCTCACGCTGCCCCCGGGGAACTGTGGGTTCGAGCACTCCGGGCCCACCTCGAAGGACTG
GGCCCTTCAGTTTACACATCAGACCAAAAAGCAACCTCGCAGAATGAAACGGGAAGATCTACACTCTATG
AAGTACGTGGAGCTTTACCTGGTGGCTGATTATGCAGAGTTTCAGAAGAATCGACATGACCAGGATGCCA
CCAAACGCAAGCTCATGGAGATTGCCAACTATGTTGATAAGTTTTACCGCTCCCTGAACATCCGAATTGC
ACTTGTCGGCTTGGAGGTGTGGACGCATGGGGATAAGTGTGAAGTTTCAGAGAATCCCTACTCTACCCTC
TGGTCCTTTCTTAGTTGGAGGCGCAAGCTGCTTGCTCAGAAGAGCCATGACAATGCTCAGCTAATCACGG
GCAGGTCCTTCCAAGGCACCACCATTGGCCTGGCCCCCCTCATGGCCATGTGCTCCGTGTACCAGTCTGG
AGGAGTTAGCATGGACCACTCCGAGAATGCCATTGGTGTAGCCTCCACTGTGGCCCATGAGATTGGCCAC
AACTTTGGCATGAGCCATGATTCTGCACACTGCTGTTCTGCCAGTGCAGCCGATGGCGGCTGCATCATGG
CCGCCGCCACCGGGCACCCTTTCCCCAAAGTGTTCAGTTGGTGTAACAGGAAGGAGCTGGACAGGTATCT
GCAGACAGGAGGAGGGATGTGTCTCTCCAACATGCCGGACACTAGGACGCTGTATGGAGGCCGGAGGTGT
GGCAACGGGTACCTGGAAGACGGTGAAGAATGTGACTGTGGAGAAGAGGAGGAATGTAAGAACCCTTGCT
GCAATGCCTCCAACTGCACTCTGAAGGAAGGGGCAGAGTGTGCCCATGGTTCCTGCTGCCACCAGTGCAA
GCTGGTGGCTCCTGGAACCCAGTGTCGGGAGCAGGTTCGGCAATGTGACCTCCCCGAGTTCTGCACCGGC
AAGTCTCCCCACTGCCCCACCAACTATTATCAGATGGATGGCACCCCCTGCGAGGGTGGCCAGGCCTACT
GCTACAACGGCATGTGCCTCACTTACCAGGAACAGTGCCAGCAGCTGTGGGGACCTGGAGCCCGGCCTGC
CCTCGATCTTTGCTTTGAGAGGGTGAATGCTGCTGGTGACACCTATGGAAACTGTGGCAAGGGCTTGAAT
GGCCAATACAGGAAGTGCAGTCCCAGGGATGCCAAGTGTGGGAAGATTCAGTGCCAGAGCACCCAGGCCC
GGCCCCTGGAATCCAACGCAGTATCTATTGACACCACCATCACCTTGAACGGGAGGCGGATCCACTGTCG
GGGCACCCACGTCTACCGGGGTCCTGAGGAGGAGGAAGGGGAAGGTGACATGCTGGACCCAGGGCTGGTG
ATGACTGGAACCAAGTGTGGCCACAACCATATTTGCTTCGAGGGGCAGTGCAGGAACACCTCCTTCTTTG
AGACGGAAGGCTGTGGGAAAAAGTGCAATGGCCACGGGGTCTGCAACAACAACAAGAACTGTCATTGCTT
CCCTGGCTGGTCTCCACCTTTCTGTAACACCCCGGGAGATGGTGGCAGCGTCGACAGTGGTCCTTTGCCC
CCTAAGAGTGTGGGTCCCGTGATCGCTGGGGTGTTTTCAGCTCTCTTCGTGTTGGCAGTTCTGGTGCTAC
TGTGTCACTGCTACAGACAGAGCCACAAACTGGGCAAACCCTCGGCTCTCCCTTTCAAGCTGCGGCATCA
GTTCAGTTGTCCCTTCAGGGTATCTCAGAGTGGTGGAACTGGCCATGCCAACCCAACTTTCAAGTTGCAG
ACCCCCCAGGGCAAGCGAAAGGTGACTAACACCCCTGAATCCCTCCGGAAGCCGTCCCACCCCCCTCCCC
GGCCCCCTCCAGACTACCTGCGCGTTGAATCGCCACCTGCACCATTGCCGGCACATCTGAACAGGGCTGC
TGGGAGCTCCCCAGAAGCTGGGGCTCGAATAGAAAGAAAGGAGTCAGCCAGGAGGCCTCCCCCAAGCCGA
CCCATGCCCCCTGCACCTAACTGCCTACTGTCCCAGGACTTCTCCAGGCCTCGACCACCTCAGAAGGCAC
TCCCAGCCAATCCGGTGCCAGGCCAAAGGACCGGTCCCAGGTCAGGAGGCACCTCCCTGCTTCAGCCCCC
TACTTCTGGTCCTCAGCCCCCCAGGCCTCCAGCAGTGCCTGTTCCAAAGCTACCCGAGTACCGATCACAG
AGGGTTGGAGCAATAATTAGCTCCAAGATCTAG

Translation (920 aa):
MPGRAGVARFCLLALALQLHWPLAACEPGWTTRGSQEGSPPLQHELIIPQWRTSESPGRGKHPLRAELRV
MAEGRELILDLEKNEHLFAPAYTETCYTASGNPQTSTLKSEDHCFYHGTVRDVDESSVTLSTCRGIRGLI
IVRSNLSYIIEPVPNSDSQHRIYRSEHLTLPPGNCGFEHSGPTSKDWALQFTHQTKKQPRRMKREDLHSM
KYVELYLVADYAEFQKNRHDQDATKRKLMEIANYVDKFYRSLNIRIALVGLEVWTHGDKCEVSENPYSTL
WSFLSWRRKLLAQKSHDNAQLITGRSFQGTTIGLAPLMAMCSVYQSGGVSMDHSENAIGVASTVAHEIGH
NFGMSHDSAHCCSASAADGGCIMAAATGHPFPKVFSWCNRKELDRYLQTGGGMCLSNMPDTRTLYGGRRC
GNGYLEDGEECDCGEEEECKNPCCNASNCTLKEGAECAHGSCCHQCKLVAPGTQCREQVRQCDLPEFCTG
KSPHCPTNYYQMDGTPCEGGQAYCYNGMCLTYQEQCQQLWGPGARPALDLCFERVNAAGDTYGNCGKGLN
GQYRKCSPRDAKCGKIQCQSTQARPLESNAVSIDTTITLNGRRIHCRGTHVYRGPEEEEGEGDMLDPGLV
MTGTKCGHNHICFEGQCRNTSFFETEGCGKKCNGHGVCNNNKNCHCFPGWSPPFCNTPGDGGSVDSGPLP
PKSVGPVIAGVFSALFVLAVLVLLCHCYRQSHKLGKPSALPFKLRHQFSCPFRVSQSGGTGHANPTFKLQ
TPQGKRKVTNTPESLRKPSHPPPRPPPDYLRVESPPAPLPAHLNRAAGSSPEAGARIERKESARRPPPSR
PMPPAPNCLLSQDFSRPRPPQKALPANPVPGQRTGPRSGGTSLLQPPTSGPQPPRPPAVPVPKLPEYRSQ
RVGAIISSKI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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