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Report for CCDS36294.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36294.1 Public Mus musculus 11 Srcin1 23 108 98 CCDS HistoryNCBI Gene:56013Re-query CCDS DB by CCDS ID:36294.1Re-query CCDS DB by GeneID:56013See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36294.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107596.8 ENSMUSP00000103222.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107596.8Link to Ensembl Protein Viewer:ENSMUSP00000103222.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107596Re-query CCDS DB by Protein ID:ENSMUSP00000103222
Original member Current member NCBI NM_018873.2 NP_061361.2 Accepted alive Link to Nucleotide Sequence:NM_018873.2Link to Protein Sequence:NP_061361.2Re-query CCDS DB by Nucleotide ID:NM_018873Re-query CCDS DB by Protein ID:NP_061361Link to BLAST:NP_061361.2

Chromosomal Locations for CCDS 36294.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 97512514 97512648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97518610 97518756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97523090 97523242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97523457 97523611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97525341 97525575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97526008 97526254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97526529 97526676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97526782 97526912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97531804 97531979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97533022 97533212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97533465 97533508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97533752 97533844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97534431 97535293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97535734 97535827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97536308 97536506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97537044 97537239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97542534 97542557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97548880 97548978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97551677 97551978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 97574968 97574989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3654 nt):
ATGGGGAACGCTCCGTCCCAAGATCCGGAGCGGAGCAGCCCCCCCATGCTGTCTGCAGACGATGCCGAGT
ACCCTCGGGAGTACCGGACCCTGGGGGGTGGGGGCGGAGGTGGCAGCGGGGGCCGGCGCTTCTCCAACGT
GGGGCTGGTGCACACCTCGGAGCGCCGGCACACGGTGATCGCTGCCCAGAGCCTGGAGGCCCTCAGCGGG
CTCCAGAAAGCGGATGCTGACCGCAAGCGAGATGCGTTCATGGACCACCTGAAGAGCAAGTACCCTCAGC
ACGCCCTGGCCCTGCGAGGTCAGCAGGACAGGATGCGAGAACAGGTCGGCGGCTGGACCGTGGACCCTGT
GTGCCTCCTCAGCTCCCTCTGTTCCCACCTCCACGGCGACTCCACCCCCTCAGGGGCTGGCCAGCCTGCC
CAGCAACCAAACTACTGGAGTTTCAAGACCCGCAGCTCGCGCCATACTCAGGGAGCCCAGCCAGGGCTAG
CAGACCAGGCAGCCAAGCTGTCCTACGCCTCGGCTGAGTCGCTGGAGACAATGTCCGAGGCCGAGCTGCC
CCTGGGCTTCAGCAGGATGAACCGCTTCCGACAGAGCTTGCCTCTCTCCCGCTCTGCCAGCCAGACCAAG
CTGCGCTCACCAGGGGTCCTGTTCCTGCAGTTTGGAGAGGAGACACGACGTGTACACATCACGCATGAGG
TCAGCAGCTTGGACACGCTGCACGCACTCATCGCGCACATGTTCCCTCAGAAGCTCACCATGGGCATGCT
TAAGTCGCCCAACACCGCCATCCTCATCAAGGACGAGGCTCGCAATGTCTTCTACGAGCTGGAAGACGTC
CGGGATATCCAAGACCGAAGTATCATTAAGATCTATAGGAAGGAGCCGTTGTATGCTGCTTTTCCTGGCT
CACACCTCACCAACGGTGACCTCCGGAGAGAAATGGTTTACGCGTCGCGGGAGTCGTCGCCCACGCGGCG
CCTCAACAACCTGTCGCCCGCATCGCACCTAGCATCTAGCTCCCCGCCTCCAGGGCTGCCATCGGGGCTG
CCTTCGGGACTGCCATCGGGCTCGCCTTCGCGTTCACGCCTCTCCTATGCTGGGGGCCGGCCGCCCTCTT
ACGCCGGCAGCCCGGTGCACCACGCGGCTGAGCGACTGGGAGGCGCCCCGACCGGCCAGGGCGTGAGCCC
CAGCCCCAGCGCCATCCTGGAGCGGCGCGACGTGAAGCCAGATGAGGACCTGGCGGGCAAGGCTGGCGGC
ATGGTGCTGGTGAAGGGCGAGGGCCTCTATGCCGATCCCTACGGGCTGCTGCACGAGGGCCGTCTGAGCC
TGGCCGCCGCGGCGGGAGACCCATTCGCATACCCGGGCGCGGGCGGCTTGTACAAGCGGGGTTCCGTGCG
CTCTCTCAGCACCTACTCCGCTGCCGCGCTGCAGTCCGACCTGGAGGACTCGCTGTACAAGGCGGGCGCT
GGCGGCCCGCTCTACGGAGACGGCTATGGCTTCCGTCTGCCGCCCTCGTCCCCGCAGAAGCTGGCCGACG
TCTCGGCGCCCTCCGGGGGACCTCCACCCCCGCACAGCCCCTACTCCGGGCCACCCAGCCGCGGCTCGCC
GGTGCGCCAGTCCTTCCGCAAAGATTCGGGCTCCTCGTCGGTCTTTGCTGAGAGTCCTGGAGGCAAGGCC
CGCAGCACCGGGAGTGCCTCCACGGCCGGAGCACCACCTTCTGAACTCTTCCCTGGACCTGGGGAGCGCT
CCCTTGTAGGGTTCGGGCCGCCGGTGCCAGCCAAAGACACAGAGACCAGGGAACGCATGGAGGCTATGGA
GAAGCAGATTGCCAGCCTCACTGGCCTAGTACAGAGTGCCCTACTGCGAGGCTCAGAGCCGGAGACCCCA
AGTGAGAAGGTTGAAGGCTCCAATGGAGCAGCCACTCCCTCAGCACCAGTGTGTGGGTCAGGCAGTAAGA
GTAGCGGGGCCACTCCGGTGTCGGGCCCTCCCCCGCCCTCGGCCAGCAGCACCCCTGCAGGGCAGCCCAC
TGCTGTCAGCCGTCTGCAGATGCAGCTGCATCTGCGTGGCCTACAGAACAGCGCTAGCGACCTGCGTGGC
CAGCTTCAGCAGCTGCGCAAGCTCCAGCTCCAGAACCAGGAGTCGGTGCGCGCGCTGCTGAAGCGCACCG
AGGCGGAGCTGAGCATGCGCGTGTCGGAGGCGGCGCGGCGGCAGGAGGACCCGCTGCAGCGGCAGCGCAC
CCTGGTGGAGGAGGAGCGTTTGCGTTACCTCAACGACGAGGAGCTCATTACTCAGCAGCTCAATGACCTC
GAGAAGTCAGTGGAGAAGATCCAGAGAGACGTGGCCCATAACCACCGGCTAGTGCCGGGTCCTGAGTTGG
AAGAGAAGGCGCTGGTGCTGAAGCAGCTTGGGGAGACGCTGACGGAGCTCAAGGCTCATTTCCCAGGCCT
GCAGAGTAAGATGCGGGTGGTGCTGCGCGTGGAGGTGGAGGCAGTGAAGTTCCTGAAGGAGGAACCTCAA
CGCCTTGACGGGCTCCTCAAGCGCTGCCGGGGGGTCACTGACACGCTGGCCCAGATCCGAAGGCAAGTGG
ATGAGGGTATGTGGCCCCCCCCCAACAACCTCCTGAACCAGTCCCCCAAGAAGGTGGCAGCTGAAACCGA
CTTCAGCAAAGGCTTGGATTTTGAAATACCACCCCCGAGTCCTCCACTGAATCTTCACGAGCTGAGTGGA
CCTGCCGAAGGCACCCCTCTCACCCCAAAGAGCACTAACCCCACCAAAGGCCTGGATGCTTCCAGCAAGA
GAAACACGGACAAAGCTGTGTCTGTTGAGGCTGCGGAGAGAGACTGGGAAGAGAAGCGGGCAGCCCTGAC
CCAGTACAGCGCCAAGGACATCAACCGGCTGCTGGAAGAGACCCAGGCTGAGCTGCTCAAGGCTATCCCT
GACCTGGACTGTGCCAGCAAGACCCACCCAGGCCCTGCTCCCACTCCAGACCACAAGCCCCCTAAGGCAC
CCCATGGTCAGAAGGCAGCTCCCCGGACAGAGCCCAGTGGGAGAAGAGGATCAGATGAGCTCACAGTGCC
CCGATACCGCACAGAGAAGCCCTCCAAGTCACCCCCGCCACCCCCTCCCCGCCGGAGCTTCCCTTCCTCC
CATGGCCTGACCACAACACGCACTGGAGAAGTGGTGGTCACCAGTAAGAAAGACTCAGTCTTCATCAAGA
AGGCTGAGTCCGAGGAGCTAGAGGTCCAGAAGCCCCAGGTGAAGCTGCGCCGTGCTGTGTCTGAGGTGGT
CCGCCCCGCATCCACGCCGCCCATTATGGCCTCTGCCATCAAGGACGAGGACGACGAGGAGAGGATCATT
GCTGAGCTGGAGAGTGGTGGTAGCAGCGTGCCACCCATGAAGGTGGTGACTCCCGGAGCCTCGAGGCTGA
AGGCGGCCCAGGGCCCAGCAGGCAGCCCTGATAAAGGCAAACATGGCAAGCAACGAACGGAATACATGAG
GATCCAGGCCCAGCAGCAGGCCACTAAACCATCTAAAGAGGTGAGCGGTCCGAATGAGACCTCAAGCCCC
GGCTCAGAAAAGCCCTCTGGTTCCAGAACCTCCATCCCTGTATTGACTTCCTTTGGGGCAAGGAATTCTT
CCATCTCCTTCTAG

Translation (1217 aa):
MGNAPSQDPERSSPPMLSADDAEYPREYRTLGGGGGGGSGGRRFSNVGLVHTSERRHTVIAAQSLEALSG
LQKADADRKRDAFMDHLKSKYPQHALALRGQQDRMREQVGGWTVDPVCLLSSLCSHLHGDSTPSGAGQPA
QQPNYWSFKTRSSRHTQGAQPGLADQAAKLSYASAESLETMSEAELPLGFSRMNRFRQSLPLSRSASQTK
LRSPGVLFLQFGEETRRVHITHEVSSLDTLHALIAHMFPQKLTMGMLKSPNTAILIKDEARNVFYELEDV
RDIQDRSIIKIYRKEPLYAAFPGSHLTNGDLRREMVYASRESSPTRRLNNLSPASHLASSSPPPGLPSGL
PSGLPSGSPSRSRLSYAGGRPPSYAGSPVHHAAERLGGAPTGQGVSPSPSAILERRDVKPDEDLAGKAGG
MVLVKGEGLYADPYGLLHEGRLSLAAAAGDPFAYPGAGGLYKRGSVRSLSTYSAAALQSDLEDSLYKAGA
GGPLYGDGYGFRLPPSSPQKLADVSAPSGGPPPPHSPYSGPPSRGSPVRQSFRKDSGSSSVFAESPGGKA
RSTGSASTAGAPPSELFPGPGERSLVGFGPPVPAKDTETRERMEAMEKQIASLTGLVQSALLRGSEPETP
SEKVEGSNGAATPSAPVCGSGSKSSGATPVSGPPPPSASSTPAGQPTAVSRLQMQLHLRGLQNSASDLRG
QLQQLRKLQLQNQESVRALLKRTEAELSMRVSEAARRQEDPLQRQRTLVEEERLRYLNDEELITQQLNDL
EKSVEKIQRDVAHNHRLVPGPELEEKALVLKQLGETLTELKAHFPGLQSKMRVVLRVEVEAVKFLKEEPQ
RLDGLLKRCRGVTDTLAQIRRQVDEGMWPPPNNLLNQSPKKVAAETDFSKGLDFEIPPPSPPLNLHELSG
PAEGTPLTPKSTNPTKGLDASSKRNTDKAVSVEAAERDWEEKRAALTQYSAKDINRLLEETQAELLKAIP
DLDCASKTHPGPAPTPDHKPPKAPHGQKAAPRTEPSGRRGSDELTVPRYRTEKPSKSPPPPPPRRSFPSS
HGLTTTRTGEVVVTSKKDSVFIKKAESEELEVQKPQVKLRRAVSEVVRPASTPPIMASAIKDEDDEERII
AELESGGSSVPPMKVVTPGASRLKAAQGPAGSPDKGKHGKQRTEYMRIQAQQQATKPSKEVSGPNETSSP
GSEKPSGSRTSIPVLTSFGARNSSISF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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