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Report for CCDS37342.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37342.1 Public Mus musculus 16 Popdc2 23 108 98 CCDS HistoryNCBI Gene:64082Re-query CCDS DB by CCDS ID:37342.1Re-query CCDS DB by GeneID:64082See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37342.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114739.1 ENSMUSP00000110387.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114739.1Link to Ensembl Protein Viewer:ENSMUSP00000110387.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114739Re-query CCDS DB by Protein ID:ENSMUSP00000110387
Original member Current member NCBI NM_022318.3 NP_071713.1 Accepted alive Link to Nucleotide Sequence:NM_022318.3Link to Protein Sequence:NP_071713.1Re-query CCDS DB by Nucleotide ID:NM_022318Re-query CCDS DB by Protein ID:NP_071713Link to BLAST:NP_071713.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071713.1 367 Q9ES82 367 100% 0 0

Chromosomal Locations for CCDS 37342.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 38362657 38363147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38369484 38369592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38373819 38374236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 38377655 38377740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGAGTGCCAATGGCAGCTCGGTGGCTCAGCTCCTCTGGCAGCCGCCCGTGTGCAGGAGCTGGAAACCGG
ATGTAGAAGGAGCTGTCTATCACCTGGCCAACTGTTTCTTGCTTATGGGCTTTATGGCAGGCAGTGGAGT
GTATGGATGCTTCTATCTTTTCGGCATCCTGGGCCCAGGCTACCTCTGCTGCGTGCTGTGGGGCTGGTTT
GATGCTTGTGGACTAGACATCGTCCTTTGGAACGTCCTCCTGACAGTGGCTTGCCTGCTTCAGCTGGCAC
AGCTGGTCTATCGTGTCCGGGTGAATACCCTCCCGGAGGAATTCAATCTCCTCTACAGGACACTGTGCCT
GCCCCTGCAGGTGCCCCTGCAGGTCTACAAGGAGATTGTCCACTGCTGCCATGAGCAGGTCTTGACGCTG
GCCACAGAGCAGACCTACGCTGTGGAGGGGGAGACCCCCATCAATCGCCTGTCCCTGCTCCTCTCAGGCC
GGGTTCGAGTGAGCCAAGACGGGCAGTTTCTGCACTACATCTTTCCGTATCAGTTCATGGACTCTCCTGA
ATGGGAATCACTGCATCCTTCTGAAGAGGGGACCTTCCAGGTGACGCTGACTGCGGAGACCGAATGTAGC
TACATTTCCTGGCCCCGGAAAAATCTTTACCTTCTTCTGAACAGAGAGCGATACATCTCCCGCCTCTTCT
CAGCCCTGCTGGGCTATGACATCTCGGAGAAGCTCTATACCCTCAATGACAAGCTGTTTGCCAAGTTTGG
GTTACGCTTCGACATCCGCCTTCCCAGCCTCTACCACGTTCTGAGTCCCTCTGCCTCAGACGGGGAACCA
GAGTCTGAGAAAGATGATGAAGAAGCCCTTGAGGCAGCTGTGTCCCCTGCTCAGGCCAGGCCCATCTGCA
TCGTGCCAACACCCCCTTGTTCCGCGCCTCCAGCAACCACCAACTTTCCCGTGCCTCTGCCCCGGGCCAG
GATGCCCAGGATGCCCAGGCCGGACAGCGGCAACCTGGCCTCTAGACGTCCTCTCCAGAACTCTTCTCAA
GTTATGTCCAGATCCCAGGCCCCTCTGGCTCCAATTCACACTCCTGAGCTCTAA

Translation (367 aa):
MSANGSSVAQLLWQPPVCRSWKPDVEGAVYHLANCFLLMGFMAGSGVYGCFYLFGILGPGYLCCVLWGWF
DACGLDIVLWNVLLTVACLLQLAQLVYRVRVNTLPEEFNLLYRTLCLPLQVPLQVYKEIVHCCHEQVLTL
ATEQTYAVEGETPINRLSLLLSGRVRVSQDGQFLHYIFPYQFMDSPEWESLHPSEEGTFQVTLTAETECS
YISWPRKNLYLLLNRERYISRLFSALLGYDISEKLYTLNDKLFAKFGLRFDIRLPSLYHVLSPSASDGEP
ESEKDDEEALEAAVSPAQARPICIVPTPPCSAPPATTNFPVPLPRARMPRMPRPDSGNLASRRPLQNSSQ
VMSRSQAPLAPIHTPEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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