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Report for CCDS16544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16544.1 Public Mus musculus 2 Or4f61 23 108 98 CCDS HistoryNCBI Gene:258442Re-query CCDS DB by CCDS ID:16544.1Re-query CCDS DB by GeneID:258442See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16544.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099598.1 ENSMUSP00000097193.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099598.1Link to Ensembl Protein Viewer:ENSMUSP00000097193.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099598Re-query CCDS DB by Protein ID:ENSMUSP00000097193
Original member Current member EBI ENSMUST00000207976.3 ENSMUSP00000146418.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207976.3Link to Ensembl Protein Viewer:ENSMUSP00000146418.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000207976Re-query CCDS DB by Protein ID:ENSMUSP00000146418
Original member Current member NCBI NM_146450.2 NP_666661.2 Accepted alive Link to Nucleotide Sequence:NM_146450.2Link to Protein Sequence:NP_666661.2Re-query CCDS DB by Nucleotide ID:NM_146450Re-query CCDS DB by Protein ID:NP_666661Link to BLAST:NP_666661.2

Chromosomal Locations for CCDS 16544.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112091761 112092699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGGAAGGAACAAATCGCTCTGTTGTGTCAGAATTTATGTTCGTGGGACTCACCAACTCCTGGAAGATGC
AAGTGCTTCTCTTTGTGTTTGCTTCGGTGTTTTATATGGCTAGCATGATGGGAAACTCCCTCATCATTTT
CACAGTGGCTTCTGACCCCCACTTACATTCTCTCATGTACTTCCTGTTGGCCAATCTTTCCTTCATTGAT
TTAGGTGTTTCATGTGTCACTTGTCCCAAGATGATTTATGACCTGTTCAGAAAGCACAAAGTCATCTCCT
TTAGAGGTTGTATCACTCAAATCTTTTTCATCCATGTCATTGGTGGTGTGGAGGTGGTGCTGCTCATAGG
CATGGCATATGATAGATATGTAGCCATATGCAAGCCTCTCCATTATCTGACCATTATGAATGCAAAAATG
TGCATTTTCATCTTAGTGTCTGCCTGGGTGGTTGGCCTTATGCATTCTCTGGTTCAATTTGTTTACATAG
TAAATTTACCATTCTGTGGACCAAATATTTTGGACAGCTTTTACTGTGACCTTCCTCGGTTCATCAGACT
TGCTTGTGTAGATACCAACCAATTAGAATTAATGGTTTCAGCCAATAGTGGCTTCATCTCTGTAGGCTCC
TTCTTCATACTAGTCATATCTTACATTGTCATAATAGTCACTGTCCAGAAACATTCCTCAAGTGGTTCCT
CCAAAGCTTTGTCCACACTTTCTGCTCATATCTCTGTTGTGGTCCTGTTCTTTGGTCCTTTGATATTTGT
CTATACATGGCCTTCCCCCTCCACACACCTGGATAAGTACCTGGCTATATTTGATGCTGTTGGTACTCCT
TTTCTGAACCCTGTGATCTACACACTGAGGAATCAAGATATGAAGACAGCTATGAAAAGAGTTTGCAGAC
AGCTATTAAAATATGGGAAGATCTCCTAA

Translation (312 aa):
MEGTNRSVVSEFMFVGLTNSWKMQVLLFVFASVFYMASMMGNSLIIFTVASDPHLHSLMYFLLANLSFID
LGVSCVTCPKMIYDLFRKHKVISFRGCITQIFFIHVIGGVEVVLLIGMAYDRYVAICKPLHYLTIMNAKM
CIFILVSAWVVGLMHSLVQFVYIVNLPFCGPNILDSFYCDLPRFIRLACVDTNQLELMVSANSGFISVGS
FFILVISYIVIIVTVQKHSSSGSSKALSTLSAHISVVVLFFGPLIFVYTWPSPSTHLDKYLAIFDAVGTP
FLNPVIYTLRNQDMKTAMKRVCRQLLKYGKIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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