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Report for CCDS21678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21678.1 Public Mus musculus 7 Or2d3 23 108 98 CCDS HistoryNCBI Gene:194433Re-query CCDS DB by CCDS ID:21678.1Re-query CCDS DB by GeneID:194433See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000088687.2 ENSMUSP00000086062.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000088687.2Link to Ensembl Protein Viewer:ENSMUSP00000086062.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000088687Re-query CCDS DB by Protein ID:ENSMUSP00000086062
Original member Current member EBI ENSMUST00000208759.1 ENSMUSP00000146644.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208759.1Link to Ensembl Protein Viewer:ENSMUSP00000146644.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208759Re-query CCDS DB by Protein ID:ENSMUSP00000146644
Original member Current member EBI ENSMUST00000210644.2 ENSMUSP00000147446.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000210644.2Link to Ensembl Protein Viewer:ENSMUSP00000147446.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000210644Re-query CCDS DB by Protein ID:ENSMUSP00000147446
Original member Current member EBI ENSMUST00000214112.1 ENSMUSP00000150100.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214112.1Link to Ensembl Protein Viewer:ENSMUSP00000150100.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214112Re-query CCDS DB by Protein ID:ENSMUSP00000150100
Original member Current member EBI ENSMUST00000213251.1 ENSMUSP00000150235.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213251.1Link to Ensembl Protein Viewer:ENSMUSP00000150235.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213251Re-query CCDS DB by Protein ID:ENSMUSP00000150235
Original member Current member NCBI NM_001005570.2 NP_001005570.2 Accepted alive Link to Nucleotide Sequence:NM_001005570.2Link to Protein Sequence:NP_001005570.2Re-query CCDS DB by Nucleotide ID:NM_001005570Re-query CCDS DB by Protein ID:NP_001005570Link to BLAST:NP_001005570.2

Chromosomal Locations for CCDS 21678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 106891184 106892107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (924 nt):
ATGGGTGAAGACAACAGAACCTCTGTGACAGAATTCATCTTCCTGGGCCTCTCACAGGACCCACAGACAC
AAGTCCTGCTCTTCTTCCTCTTCCTCTTCATCTACCTGCTCACTGTGCTGGGAAACCTGCTGATCATCGT
GCTCATCCACTCAGACCCCAGACTCCACACCCCCATGTACTTTTTCCTTAGAAACCTGTCCTTTGCAGAT
CTCTGCTTTTCTACTACCACAGTGCCCCAGGTGCTTGTCCACTTCCTGGTGAAGAGGAAGACCATTTCTT
TTGCTGGATGCTCCACACAGATAGTGGTGTTGCTTCTGGTCGGATGCACAGAGTGTGCACTGCTGGCAGT
GATGTCCTATGACCGCTATGTGGCTGTCTGCAAGCCTCTGCACTACTCCACCATCATGACACACTGGGTA
TGTGTTCAGCTGGCTGCAGGGTCCTGGGCCAGTGGTGCACTTGTGTCCCTGGTGGATACCACATTCACAT
TACGTCTTCCTTATCGAGGAAACAATGTCATTAACCACTTTTTCTGTGAACCTCCTGCCCTCCTGAAGCT
GGCATCGGCAGATACATACAGCACAGAGATGGCGATCTTTGCAATGGGTGTGGTAATCCTCCTAGCACCT
GTCTCCCTCATCCTCACCTCCTACTGGAACATTGTCTCTACTGTAATCCAGATGCAGTCTGGGGAAGGAA
GGCTCAAGGTCTTCTCCACCTGTGGCTCCCACCTCATTGTTGTTGTTCTCTTCTACGGCTCAGCAATATT
TGCCTACATGAGGCCCAACTCTAAGATAATGAATGAAAAGGATAAAATGATTTCGGTGTTCTATTCAGCA
GTGACCCCGATGCTGAACCCCATCATTTACAGCCTGAGAAACAAGGATGTGAAAGGGGCCCTCAGGAGAA
TAACTTTAAAATAG

Translation (307 aa):
MGEDNRTSVTEFIFLGLSQDPQTQVLLFFLFLFIYLLTVLGNLLIIVLIHSDPRLHTPMYFFLRNLSFAD
LCFSTTTVPQVLVHFLVKRKTISFAGCSTQIVVLLLVGCTECALLAVMSYDRYVAVCKPLHYSTIMTHWV
CVQLAAGSWASGALVSLVDTTFTLRLPYRGNNVINHFFCEPPALLKLASADTYSTEMAIFAMGVVILLAP
VSLILTSYWNIVSTVIQMQSGEGRLKVFSTCGSHLIVVVLFYGSAIFAYMRPNSKIMNEKDKMISVFYSA
VTPMLNPIIYSLRNKDVKGALRRITLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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