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Report for CCDS37517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37517.1 Public Mus musculus 17 Kifc5b 23 108 98 CCDS HistoryNCBI Gene:16580Re-query CCDS DB by CCDS ID:37517.1Re-query CCDS DB by GeneID:16580See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078961.5 ENSMUSP00000077984.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078961.5Link to Ensembl Protein Viewer:ENSMUSP00000077984.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000078961Re-query CCDS DB by Protein ID:ENSMUSP00000077984
Original member Current member NCBI NM_053173.2 NP_444403.2 Accepted alive Link to Nucleotide Sequence:NM_053173.2Link to Protein Sequence:NP_444403.2Re-query CCDS DB by Nucleotide ID:NM_053173Re-query CCDS DB by Protein ID:NP_444403Link to BLAST:NP_444403.2

Chromosomal Locations for CCDS 37517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 26917268 26917285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26920797 26920931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26921020 26921119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26921807 26921860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26922676 26922723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26922905 26923302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26924009 26924788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26925442 26925732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26925826 26925899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26926220 26926295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 26932104 26932148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2019 nt):
ATGGACGTGCAGGCGCAGAGAAAGGGAAGGGAAGGGAAGAGGAACGTAGAACTGAAGGCGGCCCTGGTCA
AGTCCTCCTCCCGACTGCCCCTGTCAGCAAGCAGCCTCAAGAGGGGTCCTGACCAGATGGAGGATGCCTT
GGAGCCTGCAAAGAAACGGACACGAGTCATGGGTGCAGTGACCAAAGTTGACACATCCCGTCCCAGAGGA
CCACTCCTCAGCACAGTGTCACAGACCCAGGGCCACAATGCAGCTCAGAAAGGCCCTAAGAAGACAGGAC
CTGGTGGGTGCTCTGCTGTTGGTACAGTGCTGAGGAGCCAGAAGCCAGCTCCCGCTGCTCCTGCGAAGCC
TGGCACATCCACTGCTCCTGTGGTGGTAGGGAAGAGAGCTGGCAAACGCCCTGCCTGGGACCTGAAGGGC
CAGTTGTGTGACCTCAATGAAGAGTTGAAACGCTATCGGGAGAAGACTGAAACGCTGGAACTGGAGAACC
GGGGTCTTCGGGAGCAACTCAGAGAGGTCCAGGAGCAGGCCACGACCCTGGGGACAGAGCGGAACACCCT
GGAAGGGGAGCTGGCCAGTGTACGCAGCCGAGCTGAGCAGGACCAGCAGAGGCTGGAGACGCTGAGTGCC
CGTGTCTTGGAGCTGGAGGAATGTCTGGGTACCAGGGAAAGGCTGCTTCAGGAGCTTCAGGGAGAGCGGC
TGCAATTGCAGGAGGAGCGGAGCACACTGAGCACCCAACTGGAGGAGCAGGAGAGGAGGTTTCAGGCCAC
AGAAGCAGCTCTGTCAAGCAGCCAAGAAGAGGTGGTGTGTCTTCGGCAGAAGACTGAAGCCCAGGTGACC
TTACTGGCTGAGCAAGGAGACCGGCTCTATGGGTTAGAGATGGAGCGGCGGCGACTCCACAACCAGCTGC
AGGAACTGAAGGGCAATATCCGGGTGTTCTGCCGCGTGCGCCCTGTCCTCGAAGGGGAATCCACTCCATC
TCCTGGCTTCCTCGTGTTTCCTCCTGGCCCTGCTGGACCCTCTGATCGCCCGACGGGCCTTAGCCTCTCA
CGATCTGATGATCGGCGCTCCACCCTGACTGGGGCCCCGGCACCCACTGTCCGCCATGATTTCTCCTTTG
ATCGGGTGTTCCCGCCGGGAAGCAAGCAGGAGGAAGTGTTTGAGGAGATCGCCATGCTTGTCCAGTCAGC
ACTAGATGGCTACCCTGTGTGCATTTTTGCCTATGGACAGACAGGCAGTGGCAAGACCTTCACTATGGAA
GGAGGGCCTAGGGGAGACCCCCAATTGGCAGGGCTGATCCCTCGGGCCATGCGGCATCTGTTCTCTGTGG
CCCAGGAGATGAGCGGCCAGGGCTGGACATACAGTTTTGTGGCGAGTTACGTAGAGATCTACAATGAGAC
CGTTCGAGACCTGCTAGCTACTGGGCCCCGCAAGGGACAAGGGGGCGAGTGCGAGATCCGTCGGGCAAGC
CCAGGGAGTGAGGAGCTTACTGTCACCAATGCCCGCTATGTCCCTGTTTCCTGTGAGAAAGAGGTGGAGG
CCCTGCTCCATTTGGCTCACCAGAACCGGGCTGTGGCCCACACTGCCCAGAATAAGAGATCATCACGCAG
TCATAGTGTGTTCCAGCTGCAGATTTCTGGAGAGCATGCAGCCCGGGGCCTGCAGTGTGGCGCTCCCCTC
AACCTTGTGGACCTAGCTGGGAGTGAGCGGCTAGACCCTGGCTTACCCCTAGGCCCTGGGGAGCGTGATC
GTCTTCGGGAGACACAGGCCATTAACAGCAGTCTGTCTACATTGGGACTGGTCATAATGGCCCTGAGCAA
TAAGGAGTCCCACGTGCCTTACCGAAACAGCAAGCTCACCTACTTGCTGCAGAACTCTCTGGGTGGCAGT
GCCAAGATGCTTATGTTTGTGAATATTTCTCCTCTGGAAGAGAATGTCTCCGAGTCTCTGAATTCACTAC
GCTTTGCTTCCAAGGTGAACCAGTGTGTCATTGGTACTGCTCAGGCTAATAAGAAGTGA

Translation (672 aa):
MDVQAQRKGREGKRNVELKAALVKSSSRLPLSASSLKRGPDQMEDALEPAKKRTRVMGAVTKVDTSRPRG
PLLSTVSQTQGHNAAQKGPKKTGPGGCSAVGTVLRSQKPAPAAPAKPGTSTAPVVVGKRAGKRPAWDLKG
QLCDLNEELKRYREKTETLELENRGLREQLREVQEQATTLGTERNTLEGELASVRSRAEQDQQRLETLSA
RVLELEECLGTRERLLQELQGERLQLQEERSTLSTQLEEQERRFQATEAALSSSQEEVVCLRQKTEAQVT
LLAEQGDRLYGLEMERRRLHNQLQELKGNIRVFCRVRPVLEGESTPSPGFLVFPPGPAGPSDRPTGLSLS
RSDDRRSTLTGAPAPTVRHDFSFDRVFPPGSKQEEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME
GGPRGDPQLAGLIPRAMRHLFSVAQEMSGQGWTYSFVASYVEIYNETVRDLLATGPRKGQGGECEIRRAS
PGSEELTVTNARYVPVSCEKEVEALLHLAHQNRAVAHTAQNKRSSRSHSVFQLQISGEHAARGLQCGAPL
NLVDLAGSERLDPGLPLGPGERDRLRETQAINSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQNSLGGS
AKMLMFVNISPLEENVSESLNSLRFASKVNQCVIGTAQANKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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