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Report for CCDS39372.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39372.1 Public Mus musculus 5 Usp42 23 108 98 CCDS HistoryNCBI Gene:76800Re-query CCDS DB by CCDS ID:39372.1Re-query CCDS DB by GeneID:76800See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39372.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053287.5 ENSMUSP00000053955.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053287.5Link to Ensembl Protein Viewer:ENSMUSP00000053955.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000053287Re-query CCDS DB by Protein ID:ENSMUSP00000053955
Original member Current member NCBI NM_029749.2 NP_084025.2 Accepted alive Link to Nucleotide Sequence:NM_029749.2Link to Protein Sequence:NP_084025.2Re-query CCDS DB by Nucleotide ID:NM_029749Re-query CCDS DB by Protein ID:NP_084025Link to BLAST:NP_084025.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084025.2 1324 B2RQC2 1324 100% 0 0

Chromosomal Locations for CCDS 39372.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 143711981 143711988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143713536 143713837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143714602 143716080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143716577 143716671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143716774 143717481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143717924 143718077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143719494 143719594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143719727 143719867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143720277 143720388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143721148 143721230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143721633 143721703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143722287 143722354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143723109 143723211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143723895 143724005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143726489 143726689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 143727780 143728017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3975 nt):
ATGACCATAGTTGACAAAACTGAACCTTCAGACCCATCAACCTGTCAGAACCAGCCTGGCAGTTGTGAGG
CGGTCTCACCTGAAGACATGGACACAGGCTCTGCCAGCTGGGGCGCTGTGTCTTCAATAAGTGATGTCTC
AAGTCACACACTTCCATTAGGGCCAGTGCCTGGTGCTGTAGTTTATTCTAACTCGTCTGTACCTGAAAAA
TCAAAGCCATCACCACCAAAGGATCAAGTCCTAGGTGATGGCATTGCTCCTCCTCAAAAGGTCCTGTTTC
CATCTGAAAAGATTTGTCTTAAGTGGCAACAAAGTCATCGAGTTGGCGCTGGGCTCCAGAATTTGGGCAA
CACCTGTTTTGCCAATGCCGCATTGCAGTGTCTGACTTACACGCCACCCCTCGCCAATTACATGTTATCC
CATGAACACTCCAAGACATGCCACGCAGAAGGATTTTGTATGATGTGCACGATGCAGACACACATTACCC
AGGCACTTAGCAACCCTGGGGATGTTATCAAGCCGATGTTCGTCATCAATGAAATGCGGCGTATAGCTAG
ACACTTCCGTTTTGGAAACCAAGAAGATGCCCATGAATTTCTTCAGTACACGGTCGATGCCATGCAGAAA
GCATGTTTAAATGGCAGCAATAAATTAGACAGACACACCCAGGCCACCACCCTGGTCTGCCAGATATTTG
GAGGCTACCTAAGATCCCGAGTTAAATGTTTAAATTGCAAGGGTGTTTCAGATACCTTTGATCCATATCT
GGACATAACGTTGGAGATTAAGGCTGCACAGAGTGTTACCAAGGCGTTAGAGCAGTTTGTGAAGCCAGAA
CAACTGGATGGAGAAAACTCCTACAAGTGCAGCAAGTGCAAAAAAATGGTTCCAGCTTCAAAGAGATTCA
CAATCCATAGGTCCTCTAATGTTCTTACCATCTCACTGAAGCGCTTTGCCAACTTCACCGGTGGAAAGAT
TGCTAAGGATGTGAAATATCCTGAGTACCTTGATATCCGGCCCTATATGTCTCAGCCCAATGGAGAGCCA
ATTATTTATGTTTTGTATGCTGTGCTGGTGCACACTGGTTTTAATTGTCATGCTGGCCACTACTTTTGCT
ACATCAAGGCTAGCAATGGCCTCTGGTATCAGATGAATGACTCCATCGTGTCCACCAGTGATATCAGAGC
AGTGCTTAACCAGCAAGCTTACGTGCTCTTTTATATCAGGTCCCATGATGTGAAAAATGGAGGGGAGTCT
GCTCATCCTGCCCATAGCCCCGGCCAATCCTCTCCCCGCCCAGGAGTCAGTCAGCGGGTAGTCAACAACA
AGCAGGTGGCTCCAGGGTTTATTGGACCCCAGCTGCCTTCCCATGTGATGAAGAACACGCCACACTTGAA
TGGCACCACGCCAGTGAAAGACACACCAAGTAGTTCTGTGTCAAGCCCTAACGGAAACACCAGCGTCAAT
AGGGCCAGTCCTGCTACTGCTTCGACTTCTGTGCAGAACTGGTCTGTTACCAGACCCTCAGTTATTCCAG
ATCACCCCAAGAAACAAAAAATCACCATCAGTATTCACAACAAGTTGCCTGCTCGCCAGGGTCAGGCACC
ACTGAATAACAGCCTCCATGGCCCTTGTCTGGAGGCTCCTAGTAAGGCGGCACCCTCCTCCACCATCACT
AACCCTTCTGCAATACAGTCTACCTCGAACGTACCCACAACGTCGACTTCCCCCAGTGAGGCCTGTCCCA
AGCCCATGGTGAACGGCAAGGCTAAAGTGGGCGCCAGTGTGCTTGTCCCCTATGGGGCCGAGTCCTCAGA
AGAGTCTGATGAGGAGTCGAAGGGCCTGGCCAAGGAGAACGGTGTGGACATGATGGCCGGCACTCACTCC
GATAGGCCAGAAGCTGCTGCAGATGACGGTGCTGAGGCTTCCTCCCATGAGCTTCAAGAACCCGTCCTGC
TAAATGGTGCTAATAGCGCAGACAGTGACTCACAAGAGAACAGCCTGGCATTTGACAGTGCCAGCTGCCA
GGTCCAGCCCGAGCTACACACAGAAAACCTCTTTTCCAAACTTAATGGTCTTCCTGGAAAGGTGACGCCT
GCTCCTTTGCAGTCTGTTCCTGAAGACAGAATCCTTGAGACCTTCAAGCTTACCAACCAGGCAAAGGGTC
CAGCGGGTGAAGAGAGTTGGACTACGACAGGGGGAAGCTCTCCAAAGGACCCTGTTTCACAGCTGGAGCC
CATCAGTGATGAGCCCAGTCCCCTTGAGATACCGGAGGCTGTCACCAATGGGAGCACACAGACCCCTTCC
ACCACATCACCCCTGGAGCCCACCATCAGCTGTACCAAAGAAGACTCGTCCGTTGTTGTCTCAGCTGAAC
CTGTGGAGGGTTTGCCTTCCGTCCCTGCTCTTTGTAACAGCACTGGTACTATCTTGGGGGATACCCCAGT
GCCCGAATTGTGTGACCCTGGAGACTTGACTGCCAACCCGAGCCAGCCAACCGAAGCAGTGAAAGGTGAT
ACAGCTGAGAAGGCTCAGGACTCTGCCATGGCTGAAGTGGTGGAGAGGCTGAGCCCTGCTCCCTCAGTAC
TCACAGGTGACGGGTGTGAGCAGAAACTCTTACTTTACCTCAGCGCAGAGGGGTCAGAGGAGACAGAAGA
CTCTTCCAGAAGCTCGGCGGTCTCTGCTGACACGATGCCCCCTAAGCCTGACAGGACCACCACCAGCTCC
TGTGAAGGGGCTGCCGAGCAGGCTGCTGGGGACAGAGGCGATGGAGGCCATGTGGGACCCAAAGCTCAGG
AGCCTTCCCCAGCCAAGGAAAAGATGAGCAGCCTCCGGAAAGTGGACCGAGGACACTATCGGAGCCGGAG
AGAGCGCTCCTCCAGTGGGGAGCACGTGAGGGACAGCAGGCCCCGGCCGGAGGACCATCACCATAAGAAG
CGGCACTGCTACAGCCGAGAGCGGCCCAAGCAGGACCGACACCCTACTAATTCATACTGCAATGGGGGCC
AGCACTTGGGCCACGGGGACAGAGCCAGCCCTGAGCGCCGCTCCCTGAGCAGGTATAGTCACCACCACTC
ACGGATTAGGAGTGGCCTGGAGCAGGACTGGAGCCGGTACCACCATTTGGAAAATGAGCATGCTTGGGTC
AGGGAGAGATTCTACCAGGACAAGCTGCGGTGGGACAAGTGCAGGTATTACCACGACAGGTACACGCCCC
TATACACGGCCCGGGACGCCCGAGAATGGCGGCCTCTGCATGGTCGTGAGCATGACCGCCTTGTCCAGTC
TGGACGGCCATACAAGGACAGCTACTGGGGCCGCAAGGGCTGGGAGCTGCAATCCCGGGGGAAGGAACGG
CCCCACTTCAACAGCCCCCGAGAGGCCCCTAGCCTTGCTGTGCCCCTCGAGAGACATCTCCAAGAGAAGG
CTGCGCTGAGTGTGCAGGACAGCAGCCACAGTCTCCCTGAGCGCTTTCATGAACACAAAAGTGTCAAGTC
GAGGAAGCGGAGGTATGAGACTCTAGAAAATAATGATGGCCGTCTAGAAAAGAAAGTCCACAAAAGCCTG
GAGAAGGACACGCTAGAGGAGCCAAGGGTGAAGAAGCACAAAAAGTCTAAAAAGAAAAAGAAGTCCAAAG
ATAAACACCGGGATCGAGAAAGCAGGCACCAGCAGGAGTCTGATTTTTCAGGAGCATACTCTGATGCTGA
CCTCCATAGACACCGGAAGAAAAAGAAGAAAAAGAAAAGGCATTCCAGGAAGTCGGAGGACTTTATAAAG
GATGTTGAGATGCGTTTACCGAAGCTCTCCAGCTACGAGGCCGGCGGCCATTTCCGGAGAACAGAGGGCA
GCTTTCTCCTGGCTGATGGTCTGCCTGTGGAAGACAGCGGCCCTTTCCGGGAGAAAACGAAGCATTTAAG
GATGGAAAGCCGGCCTGACAGATGCCGTCTGTCGGAGTATGGCCAGGGTGACTAA

Translation (1324 aa):
MTIVDKTEPSDPSTCQNQPGSCEAVSPEDMDTGSASWGAVSSISDVSSHTLPLGPVPGAVVYSNSSVPEK
SKPSPPKDQVLGDGIAPPQKVLFPSEKICLKWQQSHRVGAGLQNLGNTCFANAALQCLTYTPPLANYMLS
HEHSKTCHAEGFCMMCTMQTHITQALSNPGDVIKPMFVINEMRRIARHFRFGNQEDAHEFLQYTVDAMQK
ACLNGSNKLDRHTQATTLVCQIFGGYLRSRVKCLNCKGVSDTFDPYLDITLEIKAAQSVTKALEQFVKPE
QLDGENSYKCSKCKKMVPASKRFTIHRSSNVLTISLKRFANFTGGKIAKDVKYPEYLDIRPYMSQPNGEP
IIYVLYAVLVHTGFNCHAGHYFCYIKASNGLWYQMNDSIVSTSDIRAVLNQQAYVLFYIRSHDVKNGGES
AHPAHSPGQSSPRPGVSQRVVNNKQVAPGFIGPQLPSHVMKNTPHLNGTTPVKDTPSSSVSSPNGNTSVN
RASPATASTSVQNWSVTRPSVIPDHPKKQKITISIHNKLPARQGQAPLNNSLHGPCLEAPSKAAPSSTIT
NPSAIQSTSNVPTTSTSPSEACPKPMVNGKAKVGASVLVPYGAESSEESDEESKGLAKENGVDMMAGTHS
DRPEAAADDGAEASSHELQEPVLLNGANSADSDSQENSLAFDSASCQVQPELHTENLFSKLNGLPGKVTP
APLQSVPEDRILETFKLTNQAKGPAGEESWTTTGGSSPKDPVSQLEPISDEPSPLEIPEAVTNGSTQTPS
TTSPLEPTISCTKEDSSVVVSAEPVEGLPSVPALCNSTGTILGDTPVPELCDPGDLTANPSQPTEAVKGD
TAEKAQDSAMAEVVERLSPAPSVLTGDGCEQKLLLYLSAEGSEETEDSSRSSAVSADTMPPKPDRTTTSS
CEGAAEQAAGDRGDGGHVGPKAQEPSPAKEKMSSLRKVDRGHYRSRRERSSSGEHVRDSRPRPEDHHHKK
RHCYSRERPKQDRHPTNSYCNGGQHLGHGDRASPERRSLSRYSHHHSRIRSGLEQDWSRYHHLENEHAWV
RERFYQDKLRWDKCRYYHDRYTPLYTARDAREWRPLHGREHDRLVQSGRPYKDSYWGRKGWELQSRGKER
PHFNSPREAPSLAVPLERHLQEKAALSVQDSSHSLPERFHEHKSVKSRKRRYETLENNDGRLEKKVHKSL
EKDTLEEPRVKKHKKSKKKKKSKDKHRDRESRHQQESDFSGAYSDADLHRHRKKKKKKKRHSRKSEDFIK
DVEMRLPKLSSYEAGGHFRRTEGSFLLADGLPVEDSGPFREKTKHLRMESRPDRCRLSEYGQGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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