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Report for CCDS5163.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5163.1 Public Homo sapiens 6 SLC18B1 24 110 108 CCDS HistoryNCBI Gene:116843Re-query CCDS DB by CCDS ID:5163.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5163.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000275227.9 ENSP00000275227.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000275227.9Link to Ensembl Protein Viewer:ENSP00000275227.4Re-query CCDS DB by Nucleotide ID:ENST00000275227Re-query CCDS DB by Protein ID:ENSP00000275227
Original member Current member NCBI NM_052831.3 NP_439896.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052831.3Link to Protein Sequence:NP_439896.1Re-query CCDS DB by Nucleotide ID:NM_052831Re-query CCDS DB by Protein ID:NP_439896Link to BLAST:NP_439896.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_439896.1 456 Q6NT16 456 100% 0 0

Chromosomal Locations for CCDS 5163.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 132770270 132770336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132770890 132770939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132771036 132771129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132772132 132772206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132772993 132773088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132774222 132774313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132776328 132776429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132779268 132779404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132783933 132784089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132787434 132787581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132789764 132789837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132790177 132790272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132796982 132797121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 132798414 132798456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGGAGGCGCTGGGTGACCTGGAGGGACCACGCGCACCAGGAGGTGATGATCCTGCAGGAAGTGCAGGAG
AGACCCCCGGGTGGCTTTCGAGAGAACAGGTTTTTGTACTGATATCGGCAGCTTCGGTGAACTTAGGTTC
CATGATGTGCTATTCTATACTTGGACCGTTTTTCCCCAAAGAGGCTGAAAAGAAGGGAGCCAGCAATACA
ATTATCGGTATGATCTTTGGATGTTTTGCTTTGTTCGAGTTGCTGGCATCCTTGGTATTTGGAAACTATC
TTGTACATATTGGAGCAAAATTTATGTTTGTAGCAGGAATGTTTGTCTCAGGAGGAGTTACAATTCTCTT
TGGTGTATTGGACCGAGTTCCAGATGGGCCAGTATTTATTGCTATGTGTTTTCTAGTGAGAGTAATGGAT
GCAGTTAGCTTTGCTGCAGCAATGACTGCATCTTCTTCTATCCTGGCAAAGGCTTTTCCAAATAACGTGG
CTACGGTATTGGGAAGTCTTGAGACTTTTTCTGGACTGGGGCTAATACTAGGTCCTCCTGTAGGTGGCTT
TTTGTATCAATCCTTTGGCTATGAAGTGCCTTTTATTGTTCTGGGATGCGTCGTTTTGCTGATGGTACCA
CTCAATATGTATATTTTACCCAATTACGAGTCTGATCCAGGTGAACACTCATTCTGGAAACTGATCGCTT
TACCCAAAGTTGGCCTTATAGCCTTCGTCATCAACTCACTCAGCTCGTGTTTTGGCTTCCTCGATCCTAC
TCTGTCTCTCTTTGTTTTGGAGAAGTTCAATTTACCAGCTGGATATGTGGGACTAGTATTCCTGGGTATG
GCACTGTCCTATGCCATCTCTTCACCACTATTTGGTCTCCTAAGTGATAAAAGGCCACCTCTAAGGAAAT
GGCTTCTGGTGTTTGGCAACTTAATCACAGCCGGGTGCTACATGCTCTTAGGGCCTGTCCCAATCTTGCA
TATTAAAAGTCAGCTCTGGCTGCTGGTGCTGATATTAGTTGTAAGTGGCCTCTCTGCTGGAATGAGTATA
ATTCCAACTTTCCCGGAAATTCTCAGTTGTGCACATGAAAATGGGTTTGAAGAGGGATTAAGTACATTGG
GACTTGTATCAGGTCTTTTTAGTGCAATGTGGTCAATTGGTGCTTTTATGGGACCAACGCTGGGTGGATT
TCTGTATGAGAAAATTGGTTTTGAATGGGCAGCAGCTATACAAGGTCTATGGGCTCTGATAAGTGGATTA
GCCATGGGCTTGTTTTATCTACTGGAGTATTCAAGGAGAAAAAGGTCTAAATCTCAAAACATCCTCAGCA
CAGAGGAGGAACGAACTACTCTCTTGCCTAATGAAACCTAG

Translation (456 aa):
MEALGDLEGPRAPGGDDPAGSAGETPGWLSREQVFVLISAASVNLGSMMCYSILGPFFPKEAEKKGASNT
IIGMIFGCFALFELLASLVFGNYLVHIGAKFMFVAGMFVSGGVTILFGVLDRVPDGPVFIAMCFLVRVMD
AVSFAAAMTASSSILAKAFPNNVATVLGSLETFSGLGLILGPPVGGFLYQSFGYEVPFIVLGCVVLLMVP
LNMYILPNYESDPGEHSFWKLIALPKVGLIAFVINSLSSCFGFLDPTLSLFVLEKFNLPAGYVGLVFLGM
ALSYAISSPLFGLLSDKRPPLRKWLLVFGNLITAGCYMLLGPVPILHIKSQLWLLVLILVVSGLSAGMSI
IPTFPEILSCAHENGFEEGLSTLGLVSGLFSAMWSIGAFMGPTLGGFLYEKIGFEWAAAIQGLWALISGL
AMGLFYLLEYSRRKRSKSQNILSTEEERTTLLPNET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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