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Report for CCDS36695.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36695.1 Public Mus musculus 13 Cts3 23 108 98 CCDS HistoryNCBI Gene:117066Re-query CCDS DB by CCDS ID:36695.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36695.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054702.8 ENSMUSP00000058359.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054702.8Link to Ensembl Protein Viewer:ENSMUSP00000058359.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000054702Re-query CCDS DB by Protein ID:ENSMUSP00000058359
Original member Current member EBI ENSMUST00000223815.1 ENSMUSP00000153399.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000223815.1Link to Ensembl Protein Viewer:ENSMUSP00000153399.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000223815Re-query CCDS DB by Protein ID:ENSMUSP00000153399
Original member Current member NCBI NM_026906.3 NP_081182.2 Accepted alive Link to Nucleotide Sequence:NM_026906.3Link to Protein Sequence:NP_081182.2Re-query CCDS DB by Nucleotide ID:NM_026906Re-query CCDS DB by Protein ID:NP_081182Link to BLAST:NP_081182.2
Original member Current member NCBI NM_054092.2 NP_473433.2 Accepted alive Link to Nucleotide Sequence:NM_054092.2Link to Protein Sequence:NP_473433.2Re-query CCDS DB by Nucleotide ID:NM_054092Re-query CCDS DB by Protein ID:NP_473433Link to BLAST:NP_473433.2

Chromosomal Locations for CCDS 36695.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 61564906 61565005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61566013 61566136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61566715 61566877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61567406 61567621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61568055 61568201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61568297 61568419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 61568695 61568820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGACTCCTGCTGTCTTCCTGGCCATCTTGTGGTTGGTAATGGCCTCATCATCACCATCACCTGATCCCA
TTTTGGATGCTGAATGGCAGAAGTGGAAAATAAAATATGGAAAAACATACAGTCTGGAGGAAGAAGGACA
GAAGAGAGCAGTATGGGAAGAAAATATGAAAAAGATCAAACTGCACAATGGGGAGAATGGCCTGGGGAAG
CATGGTTTCACCATGGAAATGAATGCCTTTGGTGACATGACACTTGAAGAATTCAGGAAAGAGATGATTG
AAATCCCAGTCCCAACTGTCAAGAAAGGGAAAAGTGTCCAGAAACGTCTGTCTGTTAACCTGCCCAAGTT
TATAAACTGGAAAAAGAGAGGCTATGTTACTCCTGTGCGGACACAGATTGCATGTAATTCTTGTTGGGCT
ATTTCTGTTACTGGTGCCATAGAAGGACAGATGTTCCGGAAAACAGGCCAACTGATCCCTCTGAGTGTAC
AGAACCTAGTGGACTGTGTTGACGGAAGTGGCTGTCATGCAGGCAGTGTGTTAGATTCTTTTAAGTATTT
GATGGAAAAGGGAGGTCTAGAGTCTGAGGCAACCTATCCATATGAAGACAAGCAAGGATCATGCAGGTAC
AATCCAGAGAATTCTACTGCTAGTATCACAGGCTTTGAGTTTATCCCAAACAATGAGGTTGACCTAATGA
GTGCTGTGGCAAGTCTTGGGCCCATTTCTGTTGTAATCGATGCATGGCATGAATCTTTCCTGTTCTATAA
AAGAGGTATATATTATGAGCCAAACTGCAATAACAGTTTATTTGCTCTCAGACATGCTGTGCTACTGGTT
GGCTATGGTTTTATAGGAAGAGAATCAGAAGGCAGGAAATACTGGATCATCAAGAACAGCCTGGGTACAA
AATGGGGCTATAAAGGCTATATGAAGATTGCCAAAGACCAGGGAAACCACTGTGGAATTGCTTCACTTCC
CGTTTTCCCCAGAGTGTGA

Translation (332 aa):
MTPAVFLAILWLVMASSSPSPDPILDAEWQKWKIKYGKTYSLEEEGQKRAVWEENMKKIKLHNGENGLGK
HGFTMEMNAFGDMTLEEFRKEMIEIPVPTVKKGKSVQKRLSVNLPKFINWKKRGYVTPVRTQIACNSCWA
ISVTGAIEGQMFRKTGQLIPLSVQNLVDCVDGSGCHAGSVLDSFKYLMEKGGLESEATYPYEDKQGSCRY
NPENSTASITGFEFIPNNEVDLMSAVASLGPISVVIDAWHESFLFYKRGIYYEPNCNNSLFALRHAVLLV
GYGFIGRESEGRKYWIIKNSLGTKWGYKGYMKIAKDQGNHCGIASLPVFPRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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