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Report for CCDS4287.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4287.1 Public Homo sapiens 5 SCGB3A2 24 110 108 CCDS HistoryNCBI Gene:117156Re-query CCDS DB by CCDS ID:4287.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4287.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296694.5 ENSP00000296694.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000296694.5Link to Ensembl Protein Viewer:ENSP00000296694.4Re-query CCDS DB by Nucleotide ID:ENST00000296694Re-query CCDS DB by Protein ID:ENSP00000296694
Original member Current member NCBI NM_054023.5 NP_473364.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_054023.5Link to Protein Sequence:NP_473364.1Re-query CCDS DB by Nucleotide ID:NM_054023Re-query CCDS DB by Protein ID:NP_473364Link to BLAST:NP_473364.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_473364.1 93 Q96PL1 93 100% 0 0

Chromosomal Locations for CCDS 4287.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 147878804 147878858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147881446 147881648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 147882027 147882050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (282 nt):
ATGAAGCTGGTAACTATCTTCCTGCTGGTGACCATCAGCCTTTGTAGTTACTCTGCTACTGCCTTCCTCA
TCAACAAAGTGCCCCTTCCTGTTGACAAGTTGGCACCTTTACCTCTGGACAACATTCTTCCCTTTATGGA
TCCATTAAAGCTTCTTCTGAAAACTCTGGGCATTTCTGTTGAGCACCTTGTGGAGGGGCTAAGGAAGTGT
GTAAATGAGCTGGGACCAGAGGCTTCTGAAGCTGTGAAGAAACTGCTGGAGGCGCTATCACACTTGGTGT
GA

Translation (93 aa):
MKLVTIFLLVTISLCSYSATAFLINKVPLPVDKLAPLPLDNILPFMDPLKLLLKTLGISVEHLVEGLRKC
VNELGPEASEAVKKLLEALSHLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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