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Report for CCDS29490.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29490.2 Public Mus musculus 19 Tm7sf2 23 108 98 CCDS HistoryNCBI Gene:73166Re-query CCDS DB by CCDS ID:29490.2Re-query CCDS DB by GeneID:73166See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 29490.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025713.11 ENSMUSP00000025713.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025713.11Link to Ensembl Protein Viewer:ENSMUSP00000025713.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025713Re-query CCDS DB by Protein ID:ENSMUSP00000025713
Original member Current member NCBI NM_028454.2 NP_082730.2 Accepted alive Link to Nucleotide Sequence:NM_028454.2Link to Protein Sequence:NP_082730.2Re-query CCDS DB by Nucleotide ID:NM_028454Re-query CCDS DB by Protein ID:NP_082730Link to BLAST:NP_082730.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082730.2 418 Q71KT5 418 100% 0 0

Chromosomal Locations for CCDS 29490.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 6062913 6063073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6063324 6063446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6063527 6063607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6063822 6063990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6064079 6064198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6066311 6066414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6066499 6066693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6066968 6067022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6067123 6067319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 6067669 6067720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGACTTCTCGTGAGGCCTCCCAGGCCCCACTGGAATTCGGGGGGCCGTTGGGCGTCGCGGCTTTACTGA
TCCTGCTGCCTGCCACCATGTTCCACCTGCTCCTGGCGGCTCGCTCGGGCCCGGCGCGCCTCCTGGCCCT
ACCGGCCTATCTGCCTGGGCTGGAGGAGCTGTGGAGCCCATGGGCTCTGCTGCTATTGTTCATCTGGCTC
GGCCTGCAGGTGGCGCTCTATTTGCTGCCTGCACGCAAGGTGGCCGAAGGCCTGGAACTGAAGGACAAGA
GTCGCCTGCGCTACCCTATTAATGGCTTCCAGGCTCTGGTGCTAACAGCCCTGTTGATGGGGCTGGGGGT
GTCAGTGGGGCTGCCCCTGGGGGCACTCCCTGGAATGCTCCTGCCCTTGGCCTTTGCGACCACTCTCACC
AGCTTTATCTTCAGCCTCCTCCTCTATGCGAAGGCTTTGGTAGCTCCTGCCTCAGCCCTGGCTCCTGGGG
GAAACTCAGGAAATTCCATGTATGACTTCTTTCTTGGACGGGAGCTGAACCCTCGCCTCGGTTCCTTTGA
CTTCAAATATTTCTGTGAGCTGAGACCTGGCCTCATTGGCTGGGTTTTCATTAACCTGGCCCTGCTGATG
CAGGAGGCAGAGCTTCGGGGGAGTCCTTCCCTGGCTATGTGGCTGGTCAATGGCTTCCAGTTGCTGTATG
TGGGTGATGCCCTCTGGTATGAGGAGTCTGTCCTCACCACCATGGACATAATACATGATGGTTTTGGCTT
CATGCTGGTCTTTGGAGATCTAGCTTGGGTACCATTCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTAC
CATCCACAGCCTCTGGGGTTGCCCATGGCCTTGCTCATCTGCCTCCTTAAGGTTATTGGTTACTACATCT
TCCGAGGGGCCAACTCCCAGAAAAACACATTCAGGAAGAATCCTTCTGACCCCAGCGTGGCTGGTCTTGA
GACCATCCCGACTGCCACGGGGAGGCAGCTGCTGGTGTCTGGGTGGTGGGGTATGGTTCGACACCCCAAC
TACCTGGGAGATCTCATCATGGCTCTGGCATGGTCTTTGCCCTGTGGGCTATCCCATCTGCTGCCCTACT
TCTACGTCCTCTACTTCACTGCACTGCTGGTGCACCGCGAGGCCAGAGATGAGCAGCAGTGCCTCCAAAA
GTATGGCCGTGCCTGGCAGGAGTACTGCAAGCGTGTGCCTTACCGAATCATACCCTATGTCTACTGA

Translation (418 aa):
MTSREASQAPLEFGGPLGVAALLILLPATMFHLLLAARSGPARLLALPAYLPGLEELWSPWALLLLFIWL
GLQVALYLLPARKVAEGLELKDKSRLRYPINGFQALVLTALLMGLGVSVGLPLGALPGMLLPLAFATTLT
SFIFSLLLYAKALVAPASALAPGGNSGNSMYDFFLGRELNPRLGSFDFKYFCELRPGLIGWVFINLALLM
QEAELRGSPSLAMWLVNGFQLLYVGDALWYEESVLTTMDIIHDGFGFMLVFGDLAWVPFTYSLQAQFLLY
HPQPLGLPMALLICLLKVIGYYIFRGANSQKNTFRKNPSDPSVAGLETIPTATGRQLLVSGWWGMVRHPN
YLGDLIMALAWSLPCGLSHLLPYFYVLYFTALLVHREARDEQQCLQKYGRAWQEYCKRVPYRIIPYVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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