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Report for CCDS46558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46558.1 Public Homo sapiens 2 TWIST2 24 110 108 CCDS HistoryNCBI Gene:117581Re-query CCDS DB by CCDS ID:46558.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 46558.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448943.2 ENSP00000405176.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448943.2Link to Ensembl Protein Viewer:ENSP00000405176.2Re-query CCDS DB by Nucleotide ID:ENST00000448943Re-query CCDS DB by Protein ID:ENSP00000405176
Original member Current member EBI ENST00000612363.2 ENSP00000482581.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000612363.2Link to Ensembl Protein Viewer:ENSP00000482581.1Re-query CCDS DB by Nucleotide ID:ENST00000612363Re-query CCDS DB by Protein ID:ENSP00000482581
Original member Current member NCBI NM_001271893.4 NP_001258822.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001271893.4Link to Protein Sequence:NP_001258822.1Re-query CCDS DB by Nucleotide ID:NM_001271893Re-query CCDS DB by Protein ID:NP_001258822Link to BLAST:NP_001258822.1
Original member Current member NCBI NM_057179.3 NP_476527.1 Accepted alive Link to Nucleotide Sequence:NM_057179.3Link to Protein Sequence:NP_476527.1Re-query CCDS DB by Nucleotide ID:NM_057179Re-query CCDS DB by Protein ID:NP_476527Link to BLAST:NP_476527.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258822.1 160 Q8WVJ9 160 100% 0 0
NP_476527.1 160 Q8WVJ9 160 100% 0 0

Chromosomal Locations for CCDS 46558.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 238848216 238848698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (483 nt):
ATGGAGGAGGGCTCCAGCTCGCCCGTGTCCCCCGTGGACAGCCTGGGCACCAGCGAGGAGGAGCTCGAGA
GGCAGCCCAAGCGCTTCGGCCGGAAGCGGCGCTACAGCAAGAAGTCGAGCGAAGATGGCAGCCCGACCCC
GGGCAAGCGCGGCAAGAAGGGCAGCCCCAGCGCGCAGTCCTTCGAGGAGCTGCAGAGCCAGCGCATCCTG
GCCAACGTGCGCGAGCGCCAGCGCACCCAGTCGCTCAACGAGGCCTTCGCGGCGCTGCGCAAGATCATCC
CCACGCTGCCCTCTGACAAGCTGAGCAAGATCCAGACGCTCAAGCTGGCCGCCAGGTACATAGACTTCCT
CTACCAGGTCCTGCAGAGCGACGAGATGGACAATAAGATGACCAGCTGCAGCTACGTGGCCCACGAGCGC
CTCAGCTACGCCTTCTCCGTGTGGCGCATGGAGGGCGCGTGGTCCATGTCCGCCTCCCACTAG

Translation (160 aa):
MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQSFEELQSQRIL
ANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSYVAHER
LSYAFSVWRMEGAWSMSASH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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