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Report for CCDS40188.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40188.1 Public Mus musculus 7 Ap2a2 23 108 98 CCDS HistoryNCBI Gene:11772Re-query CCDS DB by CCDS ID:40188.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40188.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003038.11 ENSMUSP00000003038.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003038.11Link to Ensembl Protein Viewer:ENSMUSP00000003038.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003038Re-query CCDS DB by Protein ID:ENSMUSP00000003038
Original member Current member NCBI NM_007459.3 NP_031485.3 Accepted alive Link to Nucleotide Sequence:NM_007459.3Link to Protein Sequence:NP_031485.3Re-query CCDS DB by Nucleotide ID:NM_007459Re-query CCDS DB by Protein ID:NP_031485Link to BLAST:NP_031485.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031485.3 938 P17427 938 100% 0 0

Chromosomal Locations for CCDS 40188.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 141562360 141562426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141588286 141588354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141597473 141597615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141598702 141598895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141602233 141602362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141604909 141605010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141609807 141609915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141611336 141611483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141612629 141612797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141614199 141614336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141619451 141619633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141620472 141620569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141620792 141621023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141621115 141621288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141623618 141623781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141626108 141626190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141627894 141627983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141629190 141629313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141630059 141630175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141630285 141630354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141630437 141630571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 141631292 141631369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2817 nt):
ATGCCGGCCGTATCCAAGGGGGACGGGATGCGAGGCCTAGCGGTCTTCATCTCCGACATCCGCAACTGTA
AAAGTAAAGAAGCTGAAATAAAGAGAATAAACAAAGAACTGGCAAATATTAGATCCAAATTTAAAGGTGA
CAAGGCTCTTGATGGCTACAGTAAAAAGAAGTATGTCTGCAAATTGCTCTTCATCTTTCTCCTTGGTCAT
GACATTGACTTTGGACACATGGAAGCTGTGAATCTTCTGAGCTCAAACAGATACACGGAAAAGCAGATTG
GCTACCTTTTCATCTCTGTATTGGTGAACTCGAATAGTGAACTGATCCGGTTGATTAACAATGCCATCAA
GAATGACCTGGCCAGCCGCAATCCTACGTTTATGGGTCTCGCCCTGCACTGCATTGCCAATGTGGGTAGC
CGTGAGATGGCGGAGGCCTTCGCCGGAGAGATCCCCAAGATCCTCGTGGCAGGAGATACCATGGATAGTG
TGAAGCAGAGCGCAGCCCTGTGCTTGTTACGCCTGTACAGGACATCACCTGACCTAGTTCCCATGGGCGA
CTGGACATCTCGTGTGGTACACCTCCTCAATGACCAGCACTTGGGGGTAGTGACTGCAGCGACTAGCCTC
ATCACCACCCTGGCCCAGAAGAACCCTGAGGAGTTCAAGACCTCTGTCTCGCTAGCTGTCTCGCGACTGA
GCAGGATTGTGACGTCTGCATCAACAGATCTTCAGGATTATACTTACTACTTTGTCCCGGCTCCTTGGCT
GTCAGTCAAGCTTCTGAGACTGCTGCAGTGCTACCCACCCCCAGACCCTGCGGTGCGTGGCCGCCTGACT
GAGTGCTTGGAGACCATCCTGAACAAGGCCCAGGAGCCACCCAAGTCCAAGAAGGTCCAGCATTCAAATG
CCAAGAACGCTGTGCTGTTTGAGGCCATCAGCCTGATCATCCACCATGACAGTGAGCCAAACTTGCTCGT
CCGCGCCTGCAACCAGCTGGGCCAGTTCCTGCAGCACCGGGAGACGAACCTACGCTACCTGGCTCTGGAG
AGCATGTGCACGCTGGCCAGCTCTGAGTTCTCCCACGAGGCCGTCAAGACCCACATTGAGACGGTCATCA
ATGCCTTGAAGACGGAAAGAGACGTGAGTGTGAGGCAGCGGGCAGTGGACCTGCTCTACGCCATGTGTGA
CCGGAGCAACGCCCAGCAGATTGTGGCTGAGATGCTGAGCTACCTAGAAACGGCTGACTACTCCATCCGA
GAGGAAATTGTGCTGAAGGTGGCCATCCTGGCTGAGAAGTATGCAGTGGACTACACTTGGTATGTGGACA
CCATCCTCAACCTCATCCGCATCGCGGGCGACTATGTGAGCGAGGAGGTGTGGTACCGCGTCATCCAGAT
TGTCATCAATCGCGATGATGTGCAGGGCTATGCTGCCAAGACGGTATTTGAGGCATTGCAGGCGCCAGCA
TGTCATGAGAACTTGGTCAAAGTGGGCGGCTACATCCTGGGGGAGTTTGGAAACTTGATAGCTGGGGACC
CACGATCCAGCCCTCTGATCCAGTTCAACCTGCTCCACTCCAAGTTCCACTTGTGCAGCGTCCCCACTCG
GGCACTCCTGCTGTCCACCTACATCAAGTTCGTGAACCTCTTTCCAGAGGTAAAAGCTACCATTCAGGAC
GTGCTGCGCAGTGACAGCCAGCTGAAGAATGCCGACGTGGAGCTGCAGCAGCGGGCTGTGGAGTACCTGC
GACTGAGCACTGTCGCCAGCACTGACATCCTGGCAACTGTCCTGGAGGAAATGCCACCCTTCCCTGAGCG
TGAGTCCTCCATCTTGGCCAAGCTGAAGAAGAAGAAGGGCCCAAGCACAGTGACTGACCTGGAGGAGACC
AAGCGGGAGCGAAGCATCGATGTGAATGGGGGCCCTGAACCCGTTCCAGCCAGCACCAGTGCTGCGTCCA
CACCTTCTCCGTCAGCAGACCTGCTGGGTCTGGGGGCCGTGCCCCCTGCTCCCACGGGGCCCCCTCCCTC
CTCTGGCGGCGGGCTGCTGGTGGACGTGTTCTCAGACTCAGCTTCTGCAGTCGCACCTCTTGCACCCGGC
TCTGAAGACAACTTTGCCAGGTTTGTTTGTAAAAATAATGGTGTATTGTTCGAAAACCAGCTGCTTCAAA
TTGGACTTAAGTCAGAATTTCGGCAGAATTTAGGCCGAATGTTCATATTTTATGGTAACAAGACCTCCAC
GCAGTTCCTAAACTTCACTCCAACACTAATCTGTGCTGACGACCTTCAAACTAATCTGAACCTGCAGACT
AAGCCCGTGGACCCAACTGTGGATGGGGGCGCACAGGTGCAACAAGTGGTCAACATTGAGTGTATATCTG
ATTTCACAGAGGCACCTGTCCTCAACATCCAGTTCAGGTATGGTGGGACCTTCCAGAATGTGTCTGTTAA
GCTTCCCATCACTCTCAACAAATTTTTCCAGCCCACAGAAATGGCTTCTCAGGATTTCTTTCAACGTTGG
AAGCAGTTGAGCAATCCACAGCAAGAAGTGCAGAATATCTTCAAAGCAAAGCATCCGATGGACACAGAGA
TCACTAAGGCAAAGATTATTGGATTTGGTTCTGCGCTCCTGGAAGAAGTTGACCCGAATCCTGCAAATTT
CGTGGGTGCTGGCATAATACACACCAAAACCACCCAGATTGGCTGCTTGTTGCGCCTGGAGCCAAACCTG
CAAGCTCAGATGTATAGACTCACCTTGCGTACCAGCAAAGACACCGTCTCTCAGAGACTATGTGAATTGC
TGTCGGAACAGTTCTAG

Translation (938 aa):
MPAVSKGDGMRGLAVFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGH
DIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGS
REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSL
ITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPDPAVRGRLT
ECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALE
SMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIR
EEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPA
CHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQD
VLRSDSQLKNADVELQQRAVEYLRLSTVASTDILATVLEEMPPFPERESSILAKLKKKKGPSTVTDLEET
KRERSIDVNGGPEPVPASTSAASTPSPSADLLGLGAVPPAPTGPPPSSGGGLLVDVFSDSASAVAPLAPG
SEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQT
KPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRYGGTFQNVSVKLPITLNKFFQPTEMASQDFFQRW
KQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSALLEEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNL
QAQMYRLTLRTSKDTVSQRLCELLSEQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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