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Report for CCDS21389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21389.1 Public Mus musculus 7 Ap3s2 23 108 98 CCDS HistoryNCBI Gene:11778Re-query CCDS DB by CCDS ID:21389.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075657.7 ENSMUSP00000075082.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075657.7Link to Ensembl Protein Viewer:ENSMUSP00000075082.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075657Re-query CCDS DB by Protein ID:ENSMUSP00000075082
Original member Current member NCBI NM_009682.3 NP_033812.3 Accepted alive Link to Nucleotide Sequence:NM_009682.3Link to Protein Sequence:NP_033812.3Re-query CCDS DB by Nucleotide ID:NM_009682Re-query CCDS DB by Protein ID:NP_033812Link to BLAST:NP_033812.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033812.3 193 Q8BSZ2 193 100% 0 0

Chromosomal Locations for CCDS 21389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 79880484 79880612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79882466 79882573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79909835 79909906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79915147 79915258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79916016 79916107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79920509 79920577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGATTCAGGCGATTCTGGTTTTCAACAACCATGGAAAACCGCGGCTGGTCCGCTTCTACCAGCGTTTTC
CAGAAGAAATTCAACAGCAGATTGTTCGAGAGACTTTCCATCTGGTCCTCAAGCGAGATGACAACATCTG
TAACTTCTTAGAAGGTGGAAGTTTGATTGGTGGCTCTGACTACAAACTGATTTACCGGCACTATGCCACC
CTCTACTTTGTGTTTTGTGTGGATTCATCAGAGAGTGAACTTGGGATCTTGGACCTCATCCAGGTTTTTG
TGGAGACACTGGATAAGTGTTTTGAGAATGTATGTGAGTTGGACTTGATCTTCCATATGGATAAGGTGCA
CTACATCCTGCAGGAGGTGGTGATGGGTGGAATGGTGTTGGAGACAAACATGAATGAAATTGTGGCTCAA
ATCGAAGCTCAAAACCGACTGGAGAAGTCGGAGGGCGGCCTCTCTGCAGCTCCAGCAAGGGCCGTGTCCG
CTGTGAAGAACATCAACCTCCCTGAGATCCCCAGGAACATCAACATCGGTGACCTCAACATCAAAGTCCC
CAACCTGTCCCAGTTTGTGTGA

Translation (193 aa):
MIQAILVFNNHGKPRLVRFYQRFPEEIQQQIVRETFHLVLKRDDNICNFLEGGSLIGGSDYKLIYRHYAT
LYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFHMDKVHYILQEVVMGGMVLETNMNEIVAQ
IEAQNRLEKSEGGLSAAPARAVSAVKNINLPEIPRNINIGDLNIKVPNLSQFV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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