NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36215.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36215.1 Public Mus musculus 11 Tekt1 23 108 98 CCDS HistoryNCBI Gene:21689Re-query CCDS DB by CCDS ID:36215.1Re-query CCDS DB by GeneID:21689See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36215.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021155.3 ENSMUSP00000021155.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021155.3Link to Ensembl Protein Viewer:ENSMUSP00000021155.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000021155Re-query CCDS DB by Protein ID:ENSMUSP00000021155
Original member Current member EBI ENSMUST00000108502.7 ENSMUSP00000104142.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108502.7Link to Ensembl Protein Viewer:ENSMUSP00000104142.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108502Re-query CCDS DB by Protein ID:ENSMUSP00000104142
Original member Current member EBI ENSMUST00000108503.8 ENSMUSP00000104143.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108503.8Link to Ensembl Protein Viewer:ENSMUSP00000104143.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108503Re-query CCDS DB by Protein ID:ENSMUSP00000104143
Original member Current member NCBI NM_001282006.1 NP_001268935.1 Accepted alive Link to Nucleotide Sequence:NM_001282006.1Link to Protein Sequence:NP_001268935.1Re-query CCDS DB by Nucleotide ID:NM_001282006Re-query CCDS DB by Protein ID:NP_001268935Link to BLAST:NP_001268935.1
Original member Current member NCBI NM_001282007.1 NP_001268936.1 Accepted alive Link to Nucleotide Sequence:NM_001282007.1Link to Protein Sequence:NP_001268936.1Re-query CCDS DB by Nucleotide ID:NM_001282007Re-query CCDS DB by Protein ID:NP_001268936Link to BLAST:NP_001268936.1
Original member Current member NCBI NM_011569.3 NP_035699.2 Accepted alive Link to Nucleotide Sequence:NM_011569.3Link to Protein Sequence:NP_035699.2Re-query CCDS DB by Nucleotide ID:NM_011569Re-query CCDS DB by Protein ID:NP_035699Link to BLAST:NP_035699.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001268935.1 418 Q9DAJ2 418 100% 0 0
NP_001268936.1 418 Q9DAJ2 418 100% 0 0
NP_035699.2 418 Q9DAJ2 418 100% 0 0

Chromosomal Locations for CCDS 36215.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 72344764 72344971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72345586 72345782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72351828 72352050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72354699 72354842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72355210 72355338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72357485 72357650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 72359679 72359868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGGCCAAGCTACTGCAATCTCCACCCAGGTTCCTTCCTGAGGAGTGGTATATTGCTAACAAAAGCCAGT
ACCACAGAGCAGAGGCCCAAAGGTCCCAATCTGAACGCTTGGTGGCAGAGAGCCAGAGGCTTGTGGAAGA
AATTGAGAAGACCACCAGGAAGTCTCAGAGCGATGTGAACAAGAAACTTGAGCAGAGACTTGAGGAGGTC
AGGTTCTGGAAGAAGGAGTTAGATGACAAACTTGAACAGCTCGTGAACCAGACGGATGACCTGCTTACGT
ACAAGACCCGCCTGGAGAGATCCTTGGAGAGCTACAAGGAGCCCCTGCACATCACGGAGAAGTGCTTGGA
ATACAGGGAGAAGCGTGTGGGCATCGATTTGGTACACGATGTGGTGGAGCAGGAGCTGCAGAAGGAGGCT
GATATCATCCACGGAGTCATGAACCTGCTTATCCGCACGCTGGAAGAGTCAACAGAACAGATCAGGCTGA
ACCGCTCTGCCAAGTACAATCTGGAAAAGGATTTGAGGGATAAGTTCACGGCCATAACTATCGATGACGT
CTGCTTCTCACTCAACAATAACTCACCAAATATCAATTTTTCTGAGAAGGTTGTGAGAATCGAGCCCAAC
TCAGTGAGTCTGGAGGACTGGCTGGACTTCTCCAATGCCAATGTGGAGAAGGCAGACAAACAGCTGAACA
ATTCAACGGCGCTGAAGACCCTGGTGGACCAAATCCTGTCCCAGACAGCCAATGACCTGCGCAGACAGTG
CGAAGTGGTAGACGAGGCATTCATAAATGGGCTGAAGGAGACCAAGGATGCCAGGAACAAGCTGGCTGAT
CATCTGGCCAAGGTTATGGAAGAAATTGCTTCCCAGGAAAAAAACATCATGGCTCTTGAAAATGCCATCA
CGCAGCAAGAAGGGCCAGCCAAGGTAGCACACACACGCCTGGAGACCAGGACGCACCGGCCGAACGTGGA
GCTGTGTCGAGATATTGCCCAGTATCGGCTGATCAAGGAGATTCAGGAGATCAACCACAATGTTGCCAGG
TTAAAGGAAACCCTGGCCCAGGCTCAGACGCAGCTGAAGGCCCTGTACCGCAGGCAGCTGGCCCTGCAGG
AGGAAATCCAGGTGAAGGAGAACACCATCTATATCGACCAGGTGCTGTGTATGGAGATGAGGAAGTCCAT
CCCACCTCGAGACGGCGACGACCATGGGGCCTGGGAGGGGGGCATCCGCGCAGAGGCCATCTGCTGA

Translation (418 aa):
MAKLLQSPPRFLPEEWYIANKSQYHRAEAQRSQSERLVAESQRLVEEIEKTTRKSQSDVNKKLEQRLEEV
RFWKKELDDKLEQLVNQTDDLLTYKTRLERSLESYKEPLHITEKCLEYREKRVGIDLVHDVVEQELQKEA
DIIHGVMNLLIRTLEESTEQIRLNRSAKYNLEKDLRDKFTAITIDDVCFSLNNNSPNINFSEKVVRIEPN
SVSLEDWLDFSNANVEKADKQLNNSTALKTLVDQILSQTANDLRRQCEVVDEAFINGLKETKDARNKLAD
HLAKVMEEIASQEKNIMALENAITQQEGPAKVAHTRLETRTHRPNVELCRDIAQYRLIKEIQEINHNVAR
LKETLAQAQTQLKALYRRQLALQEEIQVKENTIYIDQVLCMEMRKSIPPRDGDDHGAWEGGIRAEAIC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH