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Report for CCDS20366.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20366.1 Public Mus musculus 6 Hdac11 23 108 98 CCDS HistoryNCBI Gene:232232Re-query CCDS DB by CCDS ID:20366.1Re-query CCDS DB by GeneID:232232See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20366.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041736.10 ENSMUSP00000043828.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041736.10Link to Ensembl Protein Viewer:ENSMUSP00000043828.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000041736Re-query CCDS DB by Protein ID:ENSMUSP00000043828
Original member Current member NCBI NM_144919.2 NP_659168.1 Accepted alive Link to Nucleotide Sequence:NM_144919.2Link to Protein Sequence:NP_659168.1Re-query CCDS DB by Nucleotide ID:NM_144919Re-query CCDS DB by Protein ID:NP_659168Link to BLAST:NP_659168.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659168.1 347 Q91WA3 347 100% 0 0

Chromosomal Locations for CCDS 20366.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 91156846 91156847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91157397 91157545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91159161 91159261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91165561 91165677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91166243 91166285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91167804 91167880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91168809 91168871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91169395 91169491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91172165 91172343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 91173049 91173264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1044 nt):
ATGCCTCACGCAACACAGCTGTACCAGCATGTACCAGAGAAACGCTGGCCCATCGTGTACTCACCACGTT
ACAACATCACCTTCATGGGCCTGGAGAAGCTGCACCCCTTTGATGCTGGGAAATGGGGCAAGGTGATCAA
CTTCCTGAAAGAAGAGAAGCTGCTGTCCGATGGCATGCTGGTGGAGGCTCGGGAGGCCTCGGAGGAGGAC
CTGCTGGTGGTGCACACGAGGCGCTATCTCAACGAGCTGAAGTGGTCCTTTGTGGTGGCTACCATCACTG
AGATCCCCCCGGTCATCTTTCTTCCCAACTTCCTTGTGCAGAGGAAGGTGCTGAGGCCCCTGCGGACCCA
GACTGGAGGCACCATCATGGCAGGGAAGCTGGCTGTGGAGCGAGGCTGGGCCATCAATGTTGGTGGTGGC
TTCCACCACTGCTCCAGTGACCGTGGTGGGGGCTTCTGTGCCTATGCAGACATCACACTGGCTATCAAGT
TCCTGTTTGAACGCGTGGAAGGCATCTCCAGAGCCACCATCATTGATCTCGATGCCCACCAGGGCAATGG
GCATGAGCGAGACTTCATGGGTGACAAGCGAGTATACATCATGGATGTTTACAACCGCCACATCTACCCT
GGGGATCGCTTTGCTAAAGAGGCCATCAGGCGGAAGGTGGAATTGGAGTGGGGCACAGAAGATGAGGAAT
ATCTGGAGAAGGTGGAGAGGAATGTCAGGAGGTCCCTCCAGGAGCACCTGCCTGACGTGGTGGTGTACAA
CGCTGGCACGGACGTGCTGGAGGGAGACCGCCTCGGGGGGCTGTCCATCAGCCCAGCGGGCATTGTGAAG
AGGGATGAAGTGGTTTTCCGCGTGGTCCGAGCCCATGATATACCCATCCTCATGGTGACCTCGGGTGGGT
ACCAGAAGCGCACAGCCCGTATTATCGCCGACTCCATCCTCAACTTGCATGACCTGGGGCTCATTGGGCC
TGAGTTTCCCTGCGTCTCGGCACAGAACTCGGGCATCCCCCTGCTTTCCTGTGCTGTGCCTTGA

Translation (347 aa):
MPHATQLYQHVPEKRWPIVYSPRYNITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDGMLVEAREASEED
LLVVHTRRYLNELKWSFVVATITEIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGWAINVGGG
FHHCSSDRGGGFCAYADITLAIKFLFERVEGISRATIIDLDAHQGNGHERDFMGDKRVYIMDVYNRHIYP
GDRFAKEAIRRKVELEWGTEDEEYLEKVERNVRRSLQEHLPDVVVYNAGTDVLEGDRLGGLSISPAGIVK
RDEVVFRVVRAHDIPILMVTSGGYQKRTARIIADSILNLHDLGLIGPEFPCVSAQNSGIPLLSCAVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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