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Report for CCDS27726.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27726.1 Public Mus musculus 15 Trmu 23 108 98 CCDS HistoryNCBI Gene:72026Re-query CCDS DB by CCDS ID:27726.1Re-query CCDS DB by GeneID:72026See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27726.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000023019.11 ENSMUSP00000023019.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000023019.11Link to Ensembl Protein Viewer:ENSMUSP00000023019.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000023019Re-query CCDS DB by Protein ID:ENSMUSP00000023019
Original member Current member NCBI NM_028063.2 NP_082339.1 Accepted alive Link to Nucleotide Sequence:NM_028063.2Link to Protein Sequence:NP_082339.1Re-query CCDS DB by Nucleotide ID:NM_028063Re-query CCDS DB by Protein ID:NP_082339Link to BLAST:NP_082339.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082339.1 417 Q9DAT5 417 100% 0 0

Chromosomal Locations for CCDS 27726.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 85879377 85879458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85882674 85882839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85885086 85885192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85890205 85890327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85892567 85892739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85893826 85893879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85893954 85894020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85894926 85895026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85896360 85896504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85896835 85896917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 85897025 85897177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1254 nt):
ATGTCGGCGCTGCGGCACGTCGTGTGCGCCCTGTCTGGCGGTGTGGACAGCGCGGTGGCGGCGCTGCTGT
TGCGGCGGAGAGGTTACCAGGTGACAGGGGTATTTATGAAGAACTGGGACTCGCTGGATGAGCAGGGCGT
TTGTGCTGCTGACAAGGACTGTGAAGATGCGTATAAAGTTTGTCAGATCTTAGACATCCCTTTCCACCAG
GTGTCCTATGTGAAGGAGTATTGGAATGATGTGTTCAGTGACTTTTTGAACGAGTATGAGAAAGGAAGGA
CTCCAAACCCCGACATCAACTGCAATAAGCATATCAAGTTCAGTTGCTTTTATCACTATGCTGTGGACAA
TCTTGGAGCAGATGCCGTTGCCACTGGCCACTACGCCAGGACCTCACTGGAGGATGAGGAAGTCTTTGAG
CAAAAGCACACTAAGAAGCCTGACGGGCTGTTCAGAAATCGATTTGAAGTCAGAAACCCCGTAAAACTTC
TCCAAGCAGCTGACAGCTTTAAAGACCAGACCTTCTTTCTCAGCCAGGTTTCCCAGGATGCCCTGAGAAG
GACCATCTTTCCCCTGGGGGAACTAACAAAAGATTTTGTAAAGAAAATAGCCGCGGAGAATAGCCTCCAT
CACGTGCTTCAGAAGAGAGAGAGCATGGGCATCTGCTTCATTGGTAAGAGAAACTTGGAGCATTTCCTTC
TTCAGTATTTGCAGCCTCGGCCTGGAAAGTTTGTTTCTATCGAGGATAATACAGTTCTGGGAACACACAA
AGGTTGGTTCCTGTACACTTTGGGCCAGAGAGCTAAGATCAGCGGCTTGAGAGAGCCCTGGTACGTGGTG
GAGAAGGATGGCACCAAGGGTGACGTGCTTGTGGCTCCCCGGGTGGACCACCCAGCTCTGTACAGGGACC
TGCTCAGGACCAACCGAGTACACTGGATTGCGGAGGAGCCACCTGCTGCCTTGGTCAGAGACAAGATGAT
GGAGTGCCATTTCCGATTCCGCCACCAGATGGCACTAGTGCCCTGCGTGCTGACTCTCAATCAGGATGGC
ACTGTGTGGGTAACGGCTGTGAAGGCTGTGAGGGGCCTTGCCCTGGGACAGTTTGCAGTGTTCTACAAGG
GTGAGGAGTGCCTCGGCAGTGGGAAAATCCTGCGGCTAGGGCCGTCTGCCTACACACTCCAGAAGGGTAA
GAACAGAACTCGAGTGGCTCCCGAGGCCTCCAGTGACAGCCCAGGCCTGCACCCCACATCCTGA

Translation (417 aa):
MSALRHVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEQGVCAADKDCEDAYKVCQILDIPFHQ
VSYVKEYWNDVFSDFLNEYEKGRTPNPDINCNKHIKFSCFYHYAVDNLGADAVATGHYARTSLEDEEVFE
QKHTKKPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQDALRRTIFPLGELTKDFVKKIAAENSLH
HVLQKRESMGICFIGKRNLEHFLLQYLQPRPGKFVSIEDNTVLGTHKGWFLYTLGQRAKISGLREPWYVV
EKDGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDG
TVWVTAVKAVRGLALGQFAVFYKGEECLGSGKILRLGPSAYTLQKGKNRTRVAPEASSDSPGLHPTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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