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Report for CCDS52203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52203.1 Public Mus musculus 7 Pdcd5 23 108 98 CCDS HistoryNCBI Gene:56330Re-query CCDS DB by CCDS ID:52203.1Re-query CCDS DB by GeneID:56330See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 52203.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118501.7 ENSMUSP00000113761.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118501.7Link to Ensembl Protein Viewer:ENSMUSP00000113761.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118501Re-query CCDS DB by Protein ID:ENSMUSP00000113761
Original member Current member NCBI NM_019746.4 NP_062720.1 Accepted alive Link to Nucleotide Sequence:NM_019746.4Link to Protein Sequence:NP_062720.1Re-query CCDS DB by Nucleotide ID:NM_019746Re-query CCDS DB by Protein ID:NP_062720Link to BLAST:NP_062720.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062720.1 126 P56812 126 100% 0 0

Chromosomal Locations for CCDS 52203.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 35642135 35642185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35642615 35642686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35643624 35643715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35644351 35644412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35646144 35646181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35647306 35647371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGGCGGACGAAGAACTTGAGGCGCTGAGGAAGCAGAGGCTGGCCGAGTTGCAGGCCAAGCATGGAGATC
CTGGTGATGCAGCCCAACAGGAAGCAAAGCAAAGGGAAGCAGAAATGAGAAACAGTATCTTAGCCCAAGT
TCTGGATCAGTCAGCCCGGGCCAGATTAAGTAACTTAGCACTTGTAAAGCCTGAAAAAACTAAAGCAGTG
GAGAACTACCTTATACAGATGGCGCGGTATGGACAGCTAAGTGGGAAGGTGTCAGAACAAGGTTTGATAG
AAATACTTGAGAAAGTCAGCCAACAGACAGAAAAGAAAACAACAGTGAAATTCAACAGAAGAAAAGTAAT
GGACTCCGATGAAGACGACGCCGATTACTAA

Translation (126 aa):
MADEELEALRKQRLAELQAKHGDPGDAAQQEAKQREAEMRNSILAQVLDQSARARLSNLALVKPEKTKAV
ENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRRKVMDSDEDDADY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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