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Report for CCDS23613.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23613.1 Public Mus musculus 9 Acaa1a 23 108 98 CCDS HistoryNCBI Gene:113868Re-query CCDS DB by CCDS ID:23613.1Re-query CCDS DB by GeneID:113868See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23613.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039784.11 ENSMUSP00000042351.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039784.11Link to Ensembl Protein Viewer:ENSMUSP00000042351.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000039784Re-query CCDS DB by Protein ID:ENSMUSP00000042351
Original member Current member NCBI NM_130864.3 NP_570934.1 Accepted alive Link to Nucleotide Sequence:NM_130864.3Link to Protein Sequence:NP_570934.1Re-query CCDS DB by Nucleotide ID:NM_130864Re-query CCDS DB by Protein ID:NP_570934Link to BLAST:NP_570934.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_570934.1 424 Q921H8 424 100% 0 0

Chromosomal Locations for CCDS 23613.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 119341515 119341685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119341825 119341918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119342723 119342780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119344173 119344252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119344466 119344508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119346470 119346568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119347730 119347810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119348581 119348771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119348921 119349100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119349354 119349409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119349492 119349637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119349958 119350033 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGCATCGGCTGCAGGTAGTGCTGGGCCACCTGGCCGGCCGGCCCGAGTCGAGCTCCGCGCTGCAAGCTG
CGCCCTGCTCCGCTAGGTTCCCGCAGGCCTCGGCCTCCGACGTGGTGGTGGTGCACGGACGGCGCACCCC
CATCGGCCGCGCCAGCCGTGGAGGCTTCAAGAACACCACCCCCGACGAGCTTCTGTCGGCCGTGTTGACC
GCGGTTCTCCAGGACGTGAGGCTAAAGCCTGAGCAGCTGGGAGACATCTCCGTGGGCAATGTTCTTGAGC
CAGGAGCCGGGGCTGTCATGGCACGCATCGCCCAATTTCTGAGCGGCATCCCAGAGACTGTACCTTTGTC
TACGGTCAACAGACAGTGTTCATCGGGACTGCAGGCAGTGGCCAACATTGCTGGTGGCATCAGAAATGGG
TCTTATGACATTGGCATGGCCTGTGGGGTGGAGTCCATGTCCCTGTCTGGGATGGGGAACCCTGGGAATA
TCTCTTCCCGCCTGCTGGAGAGTGAGAAAGCCAGAGACTGCCTGACTCCTATGGGGATGACCTCGGAGAA
TGTGGCTGAGCGGTTTGGCATTTCACGGCAGAAGCAGGATGACTTTGCGCTGGCCTCCCAGCAGAAGGCA
GCAAGCGCCCAGAGCAGAGGATGCTTCCGTGCTGAGATTGTGCCTGTGACAACCACTGTCCTGGATGACA
AGGGTGACAAGAAAACCATCACCGTGTCTCAGGATGAGGGTGTCCGTCCCAGCACCACCATGCAGGGCCT
GGCCAAGCTGAAGCCTGCCTTCAAGGATGGAGGCTCTACCACGGCTGGAAACTCCAGTCAGGTGAGTGAT
GGAGCAGCTGCCGTCCTGCTGGCTCGGAGGTCCAAGGCTGAAGAACTGGGCCTCCCCATCCTTGGGGTCC
TGAGGTCCTATGCAGTGGTCGGGGTCCCTCCTGACGTCATGGGCATCGGACCTGCCTATGCCATCCCTGC
AGCCTTGCAGAAAGCAGGGCTGACTGTGAATGACATAGACATCTTTGAGATCAATGAGGCCTTTGCAAGT
CAGGCCGTCTACTGTGTGGAGAAGCTAGGAATTCCTGCAGAGAAGGTGAACCCGCTGGGGGGTGCAATAG
CCCTGGGCCACCCCCTGGGCTGCACGGGAGCAAGGCAGGTTGTCACGCTACTCAATGAACTGAAGCGTCG
TGGCAGACGGGCTTACGGCGTGGTGTCCATGTGCATCGGGACTGGGATGGGAGCTGCTGCGGTCTTTGAA
TACCCTGGGAACTGA

Translation (424 aa):
MHRLQVVLGHLAGRPESSSALQAAPCSARFPQASASDVVVVHGRRTPIGRASRGGFKNTTPDELLSAVLT
AVLQDVRLKPEQLGDISVGNVLEPGAGAVMARIAQFLSGIPETVPLSTVNRQCSSGLQAVANIAGGIRNG
SYDIGMACGVESMSLSGMGNPGNISSRLLESEKARDCLTPMGMTSENVAERFGISRQKQDDFALASQQKA
ASAQSRGCFRAEIVPVTTTVLDDKGDKKTITVSQDEGVRPSTTMQGLAKLKPAFKDGGSTTAGNSSQVSD
GAAAVLLARRSKAEELGLPILGVLRSYAVVGVPPDVMGIGPAYAIPAALQKAGLTVNDIDIFEINEAFAS
QAVYCVEKLGIPAEKVNPLGGAIALGHPLGCTGARQVVTLLNELKRRGRRAYGVVSMCIGTGMGAAAVFE
YPGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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