NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17236.1 Public Mus musculus 3 Pmp2 23 108 98 CCDS HistoryNCBI Gene:18857Re-query CCDS DB by CCDS ID:17236.1Re-query CCDS DB by GeneID:18857See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029034.8 ENSMUSP00000029034.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029034.8Link to Ensembl Protein Viewer:ENSMUSP00000029034.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000029034Re-query CCDS DB by Protein ID:ENSMUSP00000029034
Original member Current member NCBI NM_001030305.2 NP_001025476.1 Accepted alive Link to Nucleotide Sequence:NM_001030305.2Link to Protein Sequence:NP_001025476.1Re-query CCDS DB by Nucleotide ID:NM_001030305Re-query CCDS DB by Protein ID:NP_001025476Link to BLAST:NP_001025476.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025476.1 132 P24526 132 100% 0 0

Chromosomal Locations for CCDS 17236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 10180750 10180800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10182121 10182222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10182382 10182554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10183747 10183819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (399 nt):
ATGAGCAACAAATTCCTAGGCACCTGGAAGCTTGTCTCCAGTGAGCACTTCGATGACTACATGAAAGCTC
TAGGTGTGGGGTTAGCCAACAGAAAACTGGGAAACTTGGCCAAGCCTACTGTGATCATCAGCAAAAAGGG
GGATTATATCACCATTAGAACGGAAAGTGCCTTTAAAAATACAGAGATCTCCTTCAAGTTGGGCCAGGAG
TTTGATGAAACCACAGCTGACAACAGAAAAGCCAAGAGCATCGTGACACTGGAGAGAGGCTCCCTGAAGC
AAGTGCAGAAGTGGGATGGGAAAGAGACAGCCATAAGGAGAACGCTGCTGGATGGGAGAATGGTAGTGGA
GTGTATAATGAAGGGTGTGGTCTGCACCAGAATTTATGAGAAAGTCTGA

Translation (132 aa):
MSNKFLGTWKLVSSEHFDDYMKALGVGLANRKLGNLAKPTVIISKKGDYITIRTESAFKNTEISFKLGQE
FDETTADNRKAKSIVTLERGSLKQVQKWDGKETAIRRTLLDGRMVVECIMKGVVCTRIYEKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH