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Report for CCDS50121.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50121.1 Public Mus musculus 17 Capn11 23 108 98 CCDS HistoryNCBI Gene:268958Re-query CCDS DB by CCDS ID:50121.1Re-query CCDS DB by GeneID:268958See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50121.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000120717.7 ENSMUSP00000113132.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120717.7Link to Ensembl Protein Viewer:ENSMUSP00000113132.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120717Re-query CCDS DB by Protein ID:ENSMUSP00000113132
Original member Current member NCBI NM_001013767.2 NP_001013789.1 Accepted alive Link to Nucleotide Sequence:NM_001013767.2Link to Protein Sequence:NP_001013789.1Re-query CCDS DB by Nucleotide ID:NM_001013767Re-query CCDS DB by Protein ID:NP_001013789Link to BLAST:NP_001013789.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001013789.1 714 Q6J756 714 100% 0 0

Chromosomal Locations for CCDS 50121.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 45630585 45630611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45630726 45630784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45631788 45631901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45632009 45632087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45632381 45632449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45632699 45632763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45632875 45632932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45633040 45633105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45633369 45633408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45633772 45633983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45634268 45634279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45638695 45638870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45639069 45639232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45639410 45639484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45639623 45639708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45639803 45639886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45642468 45642636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45642829 45642962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45643754 45643872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45653183 45653252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45653506 45653756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 45659245 45659260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2145 nt):
ATGCTGAACTACTCAGACATCTCTTGGGCTGAAAAAGGAATGGTGGCTACCATAAACCACTCCAGGCTCA
AGGACAAGGGCGTGGGCCAACACCAAAATGCCTACAACTATAAGAATCAGAACTATGAGGACCTTCGAGC
AGAGTGTCTCAGGAAGGGGGAACTGTTCGAAGACCCCTTTTTCCCTGCTGAACCCAGGTCTATCGGTGTC
AAGAACCTGGGCCCCAACTCTGAACACATGCAGAATATCTACTGGCAGCGGCCAAAGGATATCATTCATA
ACCCCCAGTTCATCACGAATGACTTCTCTCCCACGGACATCTGCCAAGGGATCCTGGGGGACTGCTGGCT
CCTGGCTGCCATTGGCTCCCTTACCACCTGCCCCAAACTGCTGTACCGTGTGGTGCCCAGAAATCAGAGC
TTCAAGAAGAACTATGCTGGCATCTTCCACTTTCAGCTTTGGCAGTTTGGGCACTGGTTGAACGTGGTCG
TGGACGACCGGCTGCCCACTAGGAACAACAAGCTGGTATTCGTGCACGCCTCCCATCGCCAGGATTTCTG
GAGCGCCCTGCTGGAGAAGGCCTACGCCAAGCTGATCGGATCCTACGGAGCGCTGTCTGGAGGCAGCACT
TTGGAGGGTTTGGAAGATTTCACAGGCGGCGTAGCACAGTGCATTCCGCTCCAGAAGCCCCCTGGCAACA
TGCTAAGGCTCCTCAAGAAAGCCCTGGAGAAGTCTTCCCTCATGGGCTGTTCCATTGAAGTCACAGACAA
TAGTGAAGTAGAAACCATGACACATAACATGCTGGTGCGAGGACATGCTTATGCAGTGACTGGCCTAGAG
GATGTCTACTACAGAGACAAGTTGGAAACTCTAATTCGGATCCAAAATCCTTGGGGTCGGGTTGAATGGA
ATGGAGCCTGGAGTGACAAAGCCACAGAGTGGGAAGAGGTGAGCCCAGATGTTCGGGTACAGCTGCTACA
CAAGAAGGATGATGGCGATTTCTGGATGTCCTATGAAGACTTCATGAGCAACTTTACACTGCTGGAGATC
TGCAACCTCACCCCGGATGCCCTCAACACCTGGGATTACAAGAGCCGCTGGCACTCCACCTTCTATGAGG
GCAGCTGGCGAAGGGGAAGCACTGCAGGGGGCTGCAGAAACCACCCGGAGACGTTCTGGAGCAACCCCCA
GTTCAAGATCTCTCTCCCGGAAGTGGATGACCCAGAGGATGACTCTGAGAAAAACGAAATGGTTTGCACC
TGTCTGGTGGCACTGATGCAGAAGAACTGGAGACATGCTCGAGAGGGACCCCAGCTCCTCACCATAGGCT
TTGTCATCTTCTCGGTCCCAAAGGAGTTTCAGAACCTCCGGGACATCCACCTTAAGAAAGACTTCTTCTT
GAAATACCGGGACCACGGCTTTTCAGAGATCTTCATCAACTCGAGGGAGGTGAACAGCCATCTCCGGCTG
CCCCCGGGGGAATACGTCATTATCCCCTCCACCTATGAGCCCCATAAAGATGCTGACTTCCTGCTTCGGG
TCTTCACGGAGAAACACAGTGAGACCTGGTTGCTGGATGACGCCAACCGGTTTGAACATCTCCAAGAGGA
GACTGTCACTGACAAGGATTTGGACAAGGATTCTCTTCAGCTGTTTAAGATAATGGCAAACGAGGATGGC
GAAGTGGATATGTATGCACTACACAAACTTCTCAACAGGATGACAGCTAAATTAAGGAACTTCAAGACGA
AGGGCTTTAGCTTGGAAGTCTGTCGCCGGATGATCAACCTCCTGGATAAAGATGGTTCTGGCAAGCTGGA
GCTTCATGAATTCCAGGTCCTGTGGAAAAAGATCAAGAAATGGACGGAAATCTTCAAAGAGTGTGATGAG
GACCGCTCAGGGAACTTGAACTCCTATGAGATGCGCCTGGCAATAGAGAAAGCAGGCATCAAGATGAACA
ACAGAGTGACCGAGGTAGTCGTTGCCAGGTACTCGGATAACATGATTGTGGACTTTGACAGCTTCCTCAA
CTGTTTCCTGAGGCTCAAGGCCATGTTTGCGTTCTTCTTATCCATGGACACCAAGAAAACTGGTTCTATT
TGCTTGGATATTAACCAGTGGCTGCAAATAACCATGTGGGGGTAG

Translation (714 aa):
MLNYSDISWAEKGMVATINHSRLKDKGVGQHQNAYNYKNQNYEDLRAECLRKGELFEDPFFPAEPRSIGV
KNLGPNSEHMQNIYWQRPKDIIHNPQFITNDFSPTDICQGILGDCWLLAAIGSLTTCPKLLYRVVPRNQS
FKKNYAGIFHFQLWQFGHWLNVVVDDRLPTRNNKLVFVHASHRQDFWSALLEKAYAKLIGSYGALSGGST
LEGLEDFTGGVAQCIPLQKPPGNMLRLLKKALEKSSLMGCSIEVTDNSEVETMTHNMLVRGHAYAVTGLE
DVYYRDKLETLIRIQNPWGRVEWNGAWSDKATEWEEVSPDVRVQLLHKKDDGDFWMSYEDFMSNFTLLEI
CNLTPDALNTWDYKSRWHSTFYEGSWRRGSTAGGCRNHPETFWSNPQFKISLPEVDDPEDDSEKNEMVCT
CLVALMQKNWRHAREGPQLLTIGFVIFSVPKEFQNLRDIHLKKDFFLKYRDHGFSEIFINSREVNSHLRL
PPGEYVIIPSTYEPHKDADFLLRVFTEKHSETWLLDDANRFEHLQEETVTDKDLDKDSLQLFKIMANEDG
EVDMYALHKLLNRMTAKLRNFKTKGFSLEVCRRMINLLDKDGSGKLELHEFQVLWKKIKKWTEIFKECDE
DRSGNLNSYEMRLAIEKAGIKMNNRVTEVVVARYSDNMIVDFDSFLNCFLRLKAMFAFFLSMDTKKTGSI
CLDINQWLQITMWG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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