NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS36341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36341.1 Public Mus musculus 11 Hdac5 23 108 98 CCDS HistoryNCBI Gene:15184Re-query CCDS DB by CCDS ID:36341.1Re-query CCDS DB by GeneID:15184See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107152.8 ENSMUSP00000102770.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107152.8Link to Ensembl Protein Viewer:ENSMUSP00000102770.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107152Re-query CCDS DB by Protein ID:ENSMUSP00000102770
Original member NCBI NM_001077696.1 NP_001071164.1 Updated not alive Link to Nucleotide Sequence:NM_001077696.1Link to Protein Sequence:NP_001071164.1Re-query CCDS DB by Nucleotide ID:NM_001077696Re-query CCDS DB by Protein ID:NP_001071164
Current member NCBI NM_001077696.2 NP_001071164.1 Accepted alive Link to Nucleotide Sequence:NM_001077696.2Link to Protein Sequence:NP_001071164.1Re-query CCDS DB by Nucleotide ID:NM_001077696Re-query CCDS DB by Protein ID:NP_001071164Link to BLAST:NP_001071164.1

Chromosomal Locations for CCDS 36341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 102195829 102195868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102195952 102196117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102196238 102196322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102196539 102196672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102197059 102197177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102197339 102197436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102197666 102197785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102198797 102198884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102199005 102199060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102199366 102199473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102199636 102199685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102199969 102200089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102200400 102200533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102201233 102201404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102202053 102202334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102202544 102202755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102204431 102204653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102204832 102204963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102205284 102205396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102205485 102205631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102205790 102205920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102206422 102206536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102206630 102206774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102206907 102207166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102218416 102218490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 102224734 102224755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3348 nt):
ATGAACTCTCCCAACGAGTCGGCAGATGGCATGTCAGGCCGGGAACCATCCTTGGAAATCCTGCCACGGA
CTCCTCTGCACAGCATCCCTGTGGCAGTGGAGGTGAAGCCGGTGCTGCCAGGAGCCATGCCCAGCTCCAT
GGGGGGTGGAGGTGGAGGTAGCCCCAGCCCCGTGGAGCTTCGGGGGGCTCTGGCGGGCCCCATGGACCCT
GCGCTACGGGAGCAGCAACTGCAGCAGGAGCTCCTGGTCCTCAAGCAGCAGCAGCAGCTCCAGAAGCAGC
TCCTGTTCGCCGAGTTCCAGAAGCAGCACGACCACTTGACGCGGCAGCACGAGGTCCAGCTGCAGAAGCA
CCTCAAGCAGCAGCAGGAGATGCTGGCGGCTAAGAGGCAGCAGGAGCTGGAGCAGCAGCGGCAGCGGGAG
CAGCAGCGGCAGGAGGAGCTGGAGAAACAGCGGCTGGAGCAGCAGCTGCTCATCCTGCGCAACAAGGAGA
AGAGCAAAGAGAGTGCCATCGCCAGCACCGAGGTAAAGCTGAGGCTCCAGGAATTCCTGTTGTCCAAGTC
AAAGGAGCCCACGCCAGGCGGCCTCAACCATTCCCTCCCACAGCACCCCAAATGCTGGGGAGCCCACCAC
GCTTCTTTGGACCAGAGTTCCCCTCCCCAGAGCGGCCCTCCTGGGACGCCTCCCTCCTACAAATTGCCTT
TGCTTGGGCCCTATGACAGCCGTGATGACTTTCCCCTCCGTAAAACGGCCTCGGAACCCAACTTAAAAGT
ACGTTCGAGGCTAAAACAGAAGGTAGCCGAGAGGAGAAGCAGTCCCCTCCTGCGTCGAAAGGATGGCACT
GTTATTAGTACTTTTAAGAAGAGAGCAGTTGAGATCACCGGCACGGGGCCTGGGGTGTCGTCCGTGTGTA
ACAGTGCGCCCGGCTCTGGCCCCAGCTCTCCCAACAGTTCCCACAGCACCATCGCTGAGAACGGCTTTAC
TGGCTCAGTCCCCAACATCCCCACTGAGATGATCCCCCAGCACCGGGCCCTCCCTCTGGACAGTTCCCCA
AACCAGTTCAGCCTCTATACGTCTCCTTCTCTGCCCAACATCTCCCTAGGGCTGCAGGCCACTGTCACTG
TCACCAACTCGCACCTCACCGCCTCCCCGAAGCTGTCAACACAGCAGGAGGCTGAGAGGCAGGCCCTTCA
GTCCCTGCGGCAGGGCGGCACACTGACCGGCAAGTTCATGAGCACATCCTCCATCCCTGGCTGCCTGTTG
GGAGTGGCACTGGAGGGTGACACAAGCCCCCACGGGCACGCTTCCCTGCTGCAGCACGTTTTGCTCCTGG
AGCAGGCCCGGCAACAGAGCACGCTCATAGCAGTGCCGCTCCATGGGCAGTCCCCACTGGTGACGGGTGA
ACGTGTGGCCACCAGCATGAGGACGGTGGGTAAGCTCCCGAGGCACCGACCTCTGAGCCGCACTCAGTCC
TCCCCGCTGCCGCAGAGTCCCCAGGCCCTGCAGCAGCTGGTCATGCAGCAGCAGCACCAGCAGTTCCTGG
AGAAGCAGAAGCAGCAGCAGATGCAGCTGGGCAAGATCCTTACCAAAACTGGGGAGCTGTCAAGGCAGCC
CACCACTCACCCGGAGGAGACAGAAGAGGAGCTGACGGAGCAGCAGGAGGCCTTGCTGGGAGAGGGGGCC
CTGACCATTCCCCGGGAAGGCTCTACAGAAAGTGAGAGCACCCAGGAAGACCTAGAAGAGGAGGAGGAGG
AGGAGGAGGAGGAAGAGGAGGACTGCATTCAGGTCAAGGATGAGGATGGCGAGAGTGGTCCTGATGAAGG
CCCTGACTTAGAAGAGTCCAGTGCTGGTTACAAAAAGTTGTTCGCAGATGCCCAGCAGTTACAGCCCCTC
CAGGTGTACCAGGCACCCCTCAGCCTGGCCACTGTGCCTCATCAGGCCCTGGGCCGCACCCAGTCCTCAC
CTGCTGCTCCTGGGAGCATGAAGAGCCCCACAGACCAACCCACTGTGGTGAAGCACCTCTTCACCACAGG
TGTGGTCTATGACACGTTCATGCTGAAGCACCAGTGTATGTGCGGAAACACACACGTGCACCCAGAGCAC
GCCGGCCGCATCCAGAGCATCTGGTCCCGGCTGCAGGAAACTGGTCTGCTCGGCAAGTGTGAGCGGATCC
GGGGTCGTAAAGCCACACTGGATGAAATCCAGACCGTGCACTCTGAGTACCACACCCTGCTCTATGGGAC
CAGCCCCCTTAACCGGCAGAAGCTGGACAGCAAGAAGCTGCTTGGCCCCATCAGCCAGAAGATGTACGCC
ATGCTGCCCTGTGGGGGCATTGGGGTGGACAGTGACACGGTGTGGAATGAGATGCACTCCTCAAGTGCCG
TGCGAATGGCAGTGGGCTGCCTGGTGGAGCTGGCCTTCAAGGTGGCTGCAGGAGAGCTCAAGAATGGATT
TGCTATCATCCGGCCCCCAGGACACCATGCTGAGGAGTCCACAGCCATGGGATTCTGCTTCTTCAACTCC
GTAGCCATCACAGCTAAACTCCTGCAGCAGAAGCTGAGCGTGGGCAAGGTCCTCATCGTGGACTGGGATA
TTCACCATGGCAACGGCACCCAGCAAGCATTCTACAACGATCCCTCTGTGCTCTACATCTCCCTGCATCG
CTACGACAACGGGAACTTCTTTCCAGGCTCTGGGGCTCCTGAAGAGGTTGGTGGAGGGCCAGGTGTGGGG
TACAACGTAAATGTGGCGTGGACAGGAGGTGTGGATCCCCCCATTGGAGATGTGGAATACCTGACAGCCT
TCAGGACAGTGGTGATGCCCATTGCCCAGGAGTTCTCACCTGACGTCGTCCTAGTCTCCGCTGGGTTTGA
TGCTGTTGAAGGACATCTGTCTCCACTGGGTGGCTATTCTGTCACCGCCAGATGTTTTGGCCACTTGACC
AGGCAGCTCATGACACTGGCTGGGGGCCGGGTGGTGCTGGCCCTGGAGGGAGGCCATGACTTGACCGCCA
TCTGTGATGCCTCTGAGGCCTGTGTCTCGGCTCTGCTCAGCGTGGAGCTGCAGCCCTTGGATGAAGCAGT
CTTGCAGCAAAAGCCCAGCGTCAATGCGGTTGCCACACTAGAGAAAGTCATCGAGATCCAGAGCAAACAC
TGGAGCTGTGTACAGAGGTTTGCCGCTGGTCTGGGCTGCTCGCTGCGGGAGGCTCAGACAGGTGAGAAAG
AGGAGGCCGAGACTGTGAGCGCCATGGCCCTGCTTTCCGTGGGGGCTGAGCAGGCCCAGGCTGTTGCCAC
TCAAGAGCACAGCCCCAGGCCAGCAGAGGAGCCCATGGAGCAGGAGCCTGCCCTGTGA

Translation (1115 aa):
MNSPNESADGMSGREPSLEILPRTPLHSIPVAVEVKPVLPGAMPSSMGGGGGGSPSPVELRGALAGPMDP
ALREQQLQQELLVLKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEMLAAKRQQELEQQRQRE
QQRQEELEKQRLEQQLLILRNKEKSKESAIASTEVKLRLQEFLLSKSKEPTPGGLNHSLPQHPKCWGAHH
ASLDQSSPPQSGPPGTPPSYKLPLLGPYDSRDDFPLRKTASEPNLKVRSRLKQKVAERRSSPLLRRKDGT
VISTFKKRAVEITGTGPGVSSVCNSAPGSGPSSPNSSHSTIAENGFTGSVPNIPTEMIPQHRALPLDSSP
NQFSLYTSPSLPNISLGLQATVTVTNSHLTASPKLSTQQEAERQALQSLRQGGTLTGKFMSTSSIPGCLL
GVALEGDTSPHGHASLLQHVLLLEQARQQSTLIAVPLHGQSPLVTGERVATSMRTVGKLPRHRPLSRTQS
SPLPQSPQALQQLVMQQQHQQFLEKQKQQQMQLGKILTKTGELSRQPTTHPEETEEELTEQQEALLGEGA
LTIPREGSTESESTQEDLEEEEEEEEEEEEDCIQVKDEDGESGPDEGPDLEESSAGYKKLFADAQQLQPL
QVYQAPLSLATVPHQALGRTQSSPAAPGSMKSPTDQPTVVKHLFTTGVVYDTFMLKHQCMCGNTHVHPEH
AGRIQSIWSRLQETGLLGKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYA
MLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNS
VAITAKLLQQKLSVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVG
YNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAQEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLT
RQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPSVNAVATLEKVIEIQSKH
WSCVQRFAAGLGCSLREAQTGEKEEAETVSAMALLSVGAEQAQAVATQEHSPRPAEEPMEQEPAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH