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Report for CCDS35839.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35839.1 Public Mus musculus 10 Shprh 23 108 98 CCDS HistoryNCBI Gene:268281Re-query CCDS DB by CCDS ID:35839.1Re-query CCDS DB by GeneID:268281See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35839.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054814.13 ENSMUSP00000125849.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054814.13Link to Ensembl Protein Viewer:ENSMUSP00000125849.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000054814Re-query CCDS DB by Protein ID:ENSMUSP00000125849
Original member Current member NCBI NM_172937.3 NP_766525.3 Accepted alive Link to Nucleotide Sequence:NM_172937.3Link to Protein Sequence:NP_766525.3Re-query CCDS DB by Nucleotide ID:NM_172937Re-query CCDS DB by Protein ID:NP_766525Link to BLAST:NP_766525.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766525.3 1616 Q7TPQ3-2 1616 100% 0 0

Chromosomal Locations for CCDS 35839.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 11151651 11152268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11154659 11154788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11157020 11157238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11159518 11159596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11160467 11160617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11162119 11162227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11162809 11163062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11164345 11164995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11166486 11166737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11167834 11167912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11169979 11170142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11170247 11170503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11171873 11171994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11178734 11178822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11181512 11181604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11183774 11183881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11185320 11185462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11186381 11186554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11186843 11186905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11187940 11188165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11189631 11189774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11190986 11191087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11192486 11192557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11194181 11194369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11205181 11205273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11206269 11206355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 11207097 11207279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4851 nt):
ATGAGCAGCCGAAGGAAACGTGCTCCCCCGATGAAGGTCGATGAAGAAAGGCAACAGCAGCTTCACTGGA
ACATGCATGAGGACCTGAGGAGTGAGCCGCTCACCATGACGGTCGGGGAACAGGCCTGTTCAGATGCAGA
CTCTTCTTCTGATTGCATCATCATCGATGAAGGCCCTCCTGAGAGTGCACTTCACAGAGATAAGAAGAGG
CGTTCAGAGACTGTGAGCGTCTTAGAGGCCACCGAGGAAGAGACCCGTTTGTCTGTGACTTTGAATGTTA
CAGTTTCTCCCTATCGTGTGGATAATTCTTGGAAAGCATTTCTGGGAGATTTTGCTCTTCAGCTTCTCCC
CAAAGAGAGTTTAGTTGAACATTTTTCTGAAAGGACTTTTACATTGAGTCCTTCAGAGTCAAGCAGTCAG
TTCCTGATCTATGTTCATTCAGAATGTAAAAATGTAGAGAAACAAGAAAATGTTCTTGAAGGATCAGCCG
GTGTTTGTAGCAAGGGAATCCGAGTGGAATCCTCCTTCAGTAGTGACATGTTACAGGATTTGGCCTGGCT
ACAGAAGAGAAGAGGAATAAAACTCTACCAGAGACCAGACGGCACTCACACAATCAAGGTTGGAATTTAC
ATTTTGGAAGCTGGCCTAACAAGACTAGACTTCATGAGTGATGCAGGTTCCAGAATGAAAAAGTTCAATC
AGCTCATGAAGAGAGTGATGGAAAAGTTACATAATTTCATTATTCCAGATGTGCTGGAAGAAGAGGAGGA
GGGTTCAGAGAGCGAGCCCGAGGGTCAGGATATTGATGAGCTCTATCACTTTGTGAAGCAAACACACCAG
CAAGAAACACGGTCAGTCCAAGTGGACGTCCAGCACCCTGCGTTGATTCCGGTCCTGAGACCTTACCAGA
GAGAGGCAGTCAACTGGATGCTGCAGCAAGAGCAGTTCAGAAGCGCTCCTCCTGCTGATAACTCCCTGCA
CTTCTTATGGCGAGAAATTGTTACACCTGATGGCTTGAAACTCTACTATAATCCATATACAGGCTGCATC
ATTCGAGATTTCCCACATGCGGGTCCACAGTTGCTTGGTGGAATCTTAGCAGATGAGATGGGTCTTGGAA
AGACAGTGGAGGTTCTGGCTCTGATTCTGACACATACCCGACAAGACGTCAAGCAGGACGCTCTCACCCT
TCCTGAGGGAAAAGTGGTAAATTATTTCATCCCAACTCACTGTCCTAGAGAAAAAGTGAAAAATAGAGAA
ATCCAGGATACAGAATATGAACCAAAAGAGAAAGTTCACTGCCCTCCTACACGTGTGATGATCCTGACAG
CTGTGAAAGAAATGAATGGGAAGAAAGGAGTTTCTATTCTTTCTATCTATAAGTATGTCAGCTCCATATT
CAGATATGATGTTCAGCGGAACCGGGGTCTTCTGAAGCGGATGTTGAAATGTTTAATCTTTGAAGGTCTT
GTGAAACAGATCAAAGGCCATGGTTTCTCTGGGACTTTTACACTGGGGAAGAATTACAAAGAAGATGTAT
TTGATAAAACAAAAAAGCAGGCAGTAGGGAGTCCAAGGAAAATTGAGAAGGAATTGAGGAAATCAGTGAA
CAAGGATGCAGATTCTGAGTACCTGCCATCAAACACTTCTGATGACGATGAGCCTTACTATTATTACTGT
AAGGCGGGAAAAAGCCGGAGTAAGTTGAAGAAGCCTGCTTTACTAACTAAAAAGGGAAAGGGTCAGTCTG
TTCATCTGGATTCCCAAGGTGATGCTCCAGCTGCTGGAGTCTGTGCAAGTACTGATGTTCATGTGTCAGA
AAATACATGTGTCTCTGAAGACAAGCAAACCCAAGAAGCAAAAGACTGTGCTGAGTCGCCAAACCCTGCT
GCCGAGGAGTTGGCACAGTCTAACACTTCAAGTCCTTGTGAAACCTCTGATTACCGCTTTGAGTGTATAT
GTGGTGAATTTGATCAAATTGGCCACAAGCCAAGAGTTCAATGTCTGAAGTGTCACCTGTGGCAGCATGC
AAAGTGTGTGAATTATGAGGAGAAAAACCTGAAGGTTAAGCCTTTTTACTGCCCCCACTGTCTTGTTGCG
ATGGAGCCAGTATCAACAAGAGCAACTCTGATCATCTCTCCGAGCTCCATTTGCCACCAGTGGGTGGATG
AAATCAATCGGCACGTGAGGTCATCATCTCTCCGAGTTCTGGTATATCAAGGAGTGAAGAAACACGGCTT
CTTACAGCCTCATTTTTTGGCAGAACAAGATATAGTTATCATTACCTATGATGTTCTTCGTTCAGAACTA
AACTATGTCAATATCCCACATAGCAATAGTGAAGATGGGCGTCGCCTGAGGAACCAGAAGCGCTATATGG
CCATTCCCAGCCCCTTGGTAGCGGTGGAATGGTGGAGGATCTGCCTTGATGAAGCTCAGATGGTCGAGTG
TCCTACAGTAAAAGCCGCGGAAATGGCCCAGCGTTTGAGCGGGATTAATCGGTGGTGCATCAGTGGCACT
CCAGTTCAGAGAGGATTGGAAGATCTTTTTGGGCTGGTGGTCTTTCTTGGAATTGAACCTTATTGTGTCA
AACACTGGTGGATTCGGCTTCTCTATCATCCATACTGCAAGAAAAATCCTCAGCACCTGTACAGTTTTAT
TGCCAAGATAATGTGGAGGTCTGCAAAGAAAGATGTCATTGACCAAATCCAGATTCCACCTCAGACTGAA
GAAATGCACTGGCTCCATTTTTCCCCGGTGGAGAGGCATTTCTATCACCGCCAGCACGAGGTGTGCTGCC
AGGATGCCATAGTGAAGCTCAGGAAGATCTCTGACTGGGCCCTGAAGCTCAGCAGCTTGGACAGGAGAAC
TGTCTCCTCCATCCTCTACCCACTGCTGAGGCTCCGGCAGGCCTGCTGCCATCCACAGGCTGTTCGTGGG
GAATTCTTGCCACTCCAGAAGAGCACCATGACAATGGAAGAGTTGCTGACATCTCTGCAGAAGAAATGTG
GAACGGAATGTGAAGAGGCCCACCGACAACTAGTTTGTGCCCTTAACGGCTTAGCAGGCATTCACATCAT
TAAAGGTGAATATGCCTTGGCAGCGGAGCTCTACAGAGAAGTATTACGTTCATCTGAGGAGCACAAAGGA
AAACTCAAAACTGATTCCCTTCAAAGACTGCATGCCACACATAACTTAATGGAGCTGTTGGGAGCCAAAC
ACCCAGGAATACCTCCCACCTTGAGAGATGGCAGACTTGAAGAAGAGGCCAAGCAGCTGCGAGAGCACTA
TATGAGTAAGTGTAACACAGAAGTTGCCGAAGCCCAGCAAGCTTTGCAGCCTGTGCAGCAGTCCATTAGG
GAGCTCCAAAGGAAGATTCATTCTAATTCTCCTTGGTGGCTGAATGTAATCCATAGAGCAATGGAATTTT
CTGTTGATGAGGAACTTGTTCAGCGGGTGCGAAATGAAATAAGCAGTAACTACAAGCAACAAACTGACAA
GCTGTCTATGTCAGAGAAGTTCCGTGACTGCAGAGGTCTTCAGTTCTTACTTACAACACAAATGGAAGAG
CTCCATAAGTTCCAGAAGCTGGTGAGGGAGGCTGTGAAGAAGCTGGAGAAGCCTCCATCCCGGGAGGTGA
TTGAGTCTGCAACAGTTTGCCACCTGCGGCCAGCTAGACTCCCTCTCAACTGCTGCGTCTTTTGTAAAGC
TGATGAATTGTTCACAGAGTATGAATCAAAGCTATTTTTTAACACAGTCAAAGGCCAGACTGCAATCTTT
GAAGAAATGATAGAAGATGAAGAAGGACTTGTAGATGATAGAGTACCTACCACTACCAGAGGTCTGTGGG
CCGTAAGTGAGACGGAGCGATCTATGAAAGCAATATTATCATTTGCAAGATCACATAGGTTTGATGTTGA
ATATGTAGATGAAGGAAGTGTTTCAATGGATCTCTTTGAGGCATGGAAGAAGGAATATAAGTTACTTCAT
GAATACTGGATGACTCTGAGAAATCGTGTATCTGCTGTTGATGAACTTGCAATGGCTACAGAGCGACTAA
GAGTGCGCCATCCCAAAGAGCCAAAGCCAAACCCACCCGTCCATCACATCATTGAACCACACGAGGTTGA
ACAGAATCGTATAAAACTGGTGAATGATAAAGCTGTTGCTACATCACAGCTTCAGAAGAAACTTGGACAG
CTTCTTTACCTAACGAATTTGGAGAAGTCTCAAGATAAAACATCAGGAGGTATTAATCCAGAGCCTTGTC
CAATCTGTGCTCGACAGCTGGGAAAACAGTGGGCAGTGCTGACCTGCGGACACTGCTTCTGTAATGAATG
CACTTCGATTATAATTGAACAGTACAGTGTGGGGTCTCATCGAAGTTCCATCAAGTGTGCTATCTGCCGC
CAGACCACATCACACAAAGAAGTCTCCTATGTCTTCACCTCAGAGAAGGCAAACCAAGAGGATGATATCC
CTGTGAAGGGTAGCCATTCTACAAAAGTGGAAGCTGTGGTCAGAACTCTGATGAAAATACAACTTAGAGA
TCCAGGGGCCAAAGCGCTCGTTTTCTCAACGTGGCAAGATGTATTAGATATTATTTCAAAAGCTCTCACG
GACAACAACATGGAATTTACACAAATCAGTCGCATTAAGACATTCCAGGAGAACCTCTCAGCGTTTAAAT
ACGATCCCCACATCAATATTCTGCTGCTGCCCCTGCACACAGGCTCTAATGGATTAACTATCATTGAAGC
CACCCATGTCCTCCTGGTGGAGCCCATACTGAACCCTGCCCATGAGCTGCAGGCCATTGGGAGAGTGCAC
CGAATTGGACAGACCAAGTAA

Translation (1616 aa):
MSSRRKRAPPMKVDEERQQQLHWNMHEDLRSEPLTMTVGEQACSDADSSSDCIIIDEGPPESALHRDKKR
RSETVSVLEATEEETRLSVTLNVTVSPYRVDNSWKAFLGDFALQLLPKESLVEHFSERTFTLSPSESSSQ
FLIYVHSECKNVEKQENVLEGSAGVCSKGIRVESSFSSDMLQDLAWLQKRRGIKLYQRPDGTHTIKVGIY
ILEAGLTRLDFMSDAGSRMKKFNQLMKRVMEKLHNFIIPDVLEEEEEGSESEPEGQDIDELYHFVKQTHQ
QETRSVQVDVQHPALIPVLRPYQREAVNWMLQQEQFRSAPPADNSLHFLWREIVTPDGLKLYYNPYTGCI
IRDFPHAGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPTHCPREKVKNRE
IQDTEYEPKEKVHCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIFRYDVQRNRGLLKRMLKCLIFEGL
VKQIKGHGFSGTFTLGKNYKEDVFDKTKKQAVGSPRKIEKELRKSVNKDADSEYLPSNTSDDDEPYYYYC
KAGKSRSKLKKPALLTKKGKGQSVHLDSQGDAPAAGVCASTDVHVSENTCVSEDKQTQEAKDCAESPNPA
AEELAQSNTSSPCETSDYRFECICGEFDQIGHKPRVQCLKCHLWQHAKCVNYEEKNLKVKPFYCPHCLVA
MEPVSTRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKHGFLQPHFLAEQDIVIITYDVLRSEL
NYVNIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGT
PVQRGLEDLFGLVVFLGIEPYCVKHWWIRLLYHPYCKKNPQHLYSFIAKIMWRSAKKDVIDQIQIPPQTE
EMHWLHFSPVERHFYHRQHEVCCQDAIVKLRKISDWALKLSSLDRRTVSSILYPLLRLRQACCHPQAVRG
EFLPLQKSTMTMEELLTSLQKKCGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKG
KLKTDSLQRLHATHNLMELLGAKHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALQPVQQSIR
ELQRKIHSNSPWWLNVIHRAMEFSVDEELVQRVRNEISSNYKQQTDKLSMSEKFRDCRGLQFLLTTQMEE
LHKFQKLVREAVKKLEKPPSREVIESATVCHLRPARLPLNCCVFCKADELFTEYESKLFFNTVKGQTAIF
EEMIEDEEGLVDDRVPTTTRGLWAVSETERSMKAILSFARSHRFDVEYVDEGSVSMDLFEAWKKEYKLLH
EYWMTLRNRVSAVDELAMATERLRVRHPKEPKPNPPVHHIIEPHEVEQNRIKLVNDKAVATSQLQKKLGQ
LLYLTNLEKSQDKTSGGINPEPCPICARQLGKQWAVLTCGHCFCNECTSIIIEQYSVGSHRSSIKCAICR
QTTSHKEVSYVFTSEKANQEDDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALT
DNNMEFTQISRIKTFQENLSAFKYDPHINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVH
RIGQTK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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