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Report for CCDS39119.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39119.1 Public Mus musculus 5 Srp72 23 108 98 CCDS HistoryNCBI Gene:66661Re-query CCDS DB by CCDS ID:39119.1Re-query CCDS DB by GeneID:66661See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39119.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101087.9 ENSMUSP00000098648.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101087.9Link to Ensembl Protein Viewer:ENSMUSP00000098648.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101087Re-query CCDS DB by Protein ID:ENSMUSP00000098648
Original member Current member NCBI NM_025691.1 NP_079967.1 Accepted alive Link to Nucleotide Sequence:NM_025691.1Link to Protein Sequence:NP_079967.1Re-query CCDS DB by Nucleotide ID:NM_025691Re-query CCDS DB by Protein ID:NP_079967Link to BLAST:NP_079967.1

Chromosomal Locations for CCDS 39119.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 76974724 76974832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76976398 76976518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76978583 76978706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76980288 76980431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76980515 76980626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76982235 76982266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76984118 76984242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76984334 76984391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76987867 76987998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76989301 76989429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76990273 76990345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76991990 76992054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76994142 76994237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76994628 76994731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76994836 76994913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76995778 76995915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76996652 76996689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76997423 76997582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76998192 76998369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2016 nt):
ATGGCGAGCGGCGGCAGTGGTGGGGTGTCAGTCCCTGCGCTGTGGAGTGAGGTGAACCGTTATGGGCAGA
ACAGCGACTTCACGCGTGCCCTCAAGACTGTCAACAAGATATTGCAGATCAACAAGGATGATGTCACTGC
CCTGCACTGTAAAGTAGTTTGCCTTATCCAGAATGGAAGTTTCAAAGAAGCCTTGAATGTCATCAATACT
CACACCAAAGTGTTAGCCAATAACTCCCTGTCCTTTGAGAAGGCATATTGCGAGTACAGGTTGAACAGAA
TTGAGAATGCCTTGAAGACAATAGAGAGTGCCACCCAGCAGACAGACAAACTGAAGGAGCTTTATGGACA
AGTGCTGTACCGCCTGGAACGCTACGATGAGTGCTTGGCTGTGTACAGAGATCTTGTCCGGAACTCCCAG
GACGACTATGATGAGGAGAGGAAAACAAACCTGTCAGCGGTCGTTGCCGCTCAGAGCAACTGGGAAAAAG
TGGTTCCTGAGAACTTGGGTCTCCAAGAAGGCACACACGAGCTCTGTTACAACGCTGCATGTGCACTGAT
AGGGCAAGGCCAGCTGACCCAGGCCATGAAAATCCTGCAAAAAGCTGAAGATCTTTGTCGCCGTTCATTT
TCAGAAGATTCAGATGGGGCTGAGGAGGACCCCCAGGCGGAACTGGCCATCATCCATGGTCAGATGGCGT
ACATCATGCAGCTGCAGGGTCGCACAGAGGAGGCGCTGCAGCTCTACAATCAGATCATCAAGCTGAAGCC
AACAGATGTGGCACTTCTCGCTGTAATCGCAAATAACATCATTACCATTAATAAGGACCAAAATGTCTTT
GACTCCAAGAAAAAAGTGAAATTAACCAATGCAGAAGGAGTGGAGTTCAAGCTCTCAAAGAGACAGCTGC
AAGCCATAGAGTTTAACAAAGCTTTGCTTGCCATGTATACAAACCAGGCAGAACAGTGCCGAAAAATAGC
TGCCAGCTTGCAGTCGCAGAGTCCTGAGTATCTCCTGCCTGTGCTAATCCAAGCCGCCCAGCTCTGTCGT
GAAAAGCAGCATACAAAAGCAATAGAGCTGCTTCAGGAATTCTCTGATCAACATCCAGAAAATGCAGCTG
AAATCAAGCTTACCATGGCACAATTGAAAATTTCCCAAGGTAATATTTCCAAAGCGTGTCTAATCCTGAG
AAGTATAGAGGAGCTGAGGCACAAGCCAGGCATGGTATCTGCATTGGTGACCATGTACAGCCACGAGGAA
GATATTGATAGTGCCATCGAAGTCTTCACACAGGCTATCCAGTGGTACCAAAGCCACCAGCCCAAATCCC
CTGCTCATTTGTCCTTGATAAGAGAAGCTGCAAACTTCAAGCTCAAATATGGCCGGAAGAAGGAGGCAGT
CAGTGACCTAGAACAGCTGTGGAAACAGAATTCAAAAGATATTCACACCCTAGCCCAACTTATTTCTGCT
TACTCGCTTGTGGATCCAGAGAAAGCAAAGGCTCTTAGCAAACACCTGCCCTCATCGGATAGCATGTCTC
TAAAAGTAGATGTTGAGGCGCTTGAAAATTCTCCTGGTGCTACCTACATTCGGAAGAAGGGTGGAAAAGT
TACTGGAGATAACCAACCAAAGGAACAAGGACAGGGAGATTTGAAAAAGAAGAAGAAGAAAAAGAAAGGA
AAACTGCCTAAGAATTATGACCCAAAAGTTACCCCAGATCCAGAAAGATGGCTACCAATGCGAGAGCGCT
CTTATTACCGAGGAAGAAAGAAGGGTAAAAAGAAGGACCAGATTGGAAAAGGAACACAGGGAGCGACTGC
AGGAGCCTCCTCTGAACTGGATGCCAGTAAAGCCGTGAGCAGCCCACCCACCTCCCCGAGACCCGGCAGT
GCGGCAACAATATCGTCCTCTGCAAGTAACATTGTACCCCCAAGACACCAGAAACCTGCAGGCGCCCCAG
CAACCAAAAAGAAACAGCAACAGAAGAAGAAGAAAGGAGGGAAAAGTGGCTGGTGA

Translation (671 aa):
MASGGSGGVSVPALWSEVNRYGQNSDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINT
HTKVLANNSLSFEKAYCEYRLNRIENALKTIESATQQTDKLKELYGQVLYRLERYDECLAVYRDLVRNSQ
DDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNAACALIGQGQLTQAMKILQKAEDLCRRSF
SEDSDGAEEDPQAELAIIHGQMAYIMQLQGRTEEALQLYNQIIKLKPTDVALLAVIANNIITINKDQNVF
DSKKKVKLTNAEGVEFKLSKRQLQAIEFNKALLAMYTNQAEQCRKIAASLQSQSPEYLLPVLIQAAQLCR
EKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELRHKPGMVSALVTMYSHEE
DIDSAIEVFTQAIQWYQSHQPKSPAHLSLIREAANFKLKYGRKKEAVSDLEQLWKQNSKDIHTLAQLISA
YSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSPGATYIRKKGGKVTGDNQPKEQGQGDLKKKKKKKKG
KLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSELDASKAVSSPPTSPRPGS
AATISSSASNIVPPRHQKPAGAPATKKKQQQKKKKGGKSGW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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