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Report for CCDS15411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15411.1 Public Mus musculus 1 Serpinc1 23 108 98 CCDS HistoryNCBI Gene:11905Re-query CCDS DB by CCDS ID:15411.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064725.10 ENSMUSP00000068971.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064725.10Link to Ensembl Protein Viewer:ENSMUSP00000068971.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000064725Re-query CCDS DB by Protein ID:ENSMUSP00000068971
Original member NCBI NM_080844.4 NP_543120.1 Updated not alive Link to Nucleotide Sequence:NM_080844.4Link to Protein Sequence:NP_543120.1Re-query CCDS DB by Nucleotide ID:NM_080844Re-query CCDS DB by Protein ID:NP_543120
Current member NCBI NM_080844.5 NP_543120.1 Accepted alive Link to Nucleotide Sequence:NM_080844.5Link to Protein Sequence:NP_543120.1Re-query CCDS DB by Nucleotide ID:NM_080844Re-query CCDS DB by Protein ID:NP_543120Link to BLAST:NP_543120.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543120.1 465 P32261 465 100% 0 0

Chromosomal Locations for CCDS 15411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 160987543 160987583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160989379 160989748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160993396 160993611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160995318 160995455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160997350 160997740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160999989 161000053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161002287 161002463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGTATTCCCCTGGGGCAGGAAGTGGGGCTGCTGGTGAGAGGAAGCTTTGTCTCCTCTCTCTGCTCCTCA
TCGGTGCCTTGGGCTGTGCTATCTGTCACGGAAACCCTGTGGACGACATCTGCATAGCGAAGCCCCGAGA
CATCCCCGTGAATCCCTTGTGCATTTACCGCTCCCCTGGGAAGAAGGCCACCGAGGAGGATGGCTCAGAG
CAGAAGGTTCCAGAAGCCACCAACCGGCGGGTCTGGGAACTGTCCAAGGCCAATTCGCGATTTGCCACTA
ACTTCTACCAGCACCTGGCAGACTCCAAGAATGACAACGACAACATTTTCCTGTCACCCTTGAGCATCTC
CACTGCTTTTGCTATGACCAAGCTGGGTGCCTGTAACGACACTCTCAAGCAGCTGATGGAGGTTTTTAAA
TTTGATACCATCTCCGAGAAGACATCCGACCAGATCCACTTCTTCTTTGCCAAACTGAACTGCCGACTCT
ATCGAAAAGCCAACAAGTCCTCTGACTTGGTATCAGCCAACCGCCTTTTTGGAGACAAATCCCTCACCTT
CAACGAGAGCTATCAAGATGTTAGTGAGGTTGTCTATGGAGCCAAGCTCCAGCCCCTGGACTTCAAGGAG
AATCCGGAGCAATCCAGAGTGACCATCAACAACTGGGTAGCTAATAAGACTGAAGGCCGCATCAAAGATG
TCATCCCACAGGGCGCCATTAACGAGCTCACTGCCCTGGTTCTGGTTAACACCATTTACTTCAAGGGCCT
GTGGAAGTCAAAGTTCAGCCCTGAGAACACAAGGAAGGAACCGTTCTATAAGGTCGATGGGCAGTCATGC
CCAGTGCCTATGATGTACCAGGAAGGCAAATTCAAATACCGGCGCGTGGCAGAGGGCACCCAGGTGCTAG
AGCTGCCCTTCAAGGGGGATGACATCACCATGGTGCTCATCCTGCCCAAGCCTGAGAAGAGCCTGGCCAA
GGTGGAGCAGGAGCTCACCCCAGAGCTGCTGCAGGAGTGGCTGGATGAGCTGTCAGAGACTATGCTTGTG
GTCCACATGCCCCGCTTCCGCACCGAGGATGGCTTCAGTCTGAAGGAGCAGCTGCAAGACATGGGCCTCA
TTGATCTCTTCAGCCCTGAAAAGTCCCAACTCCCAGGGATCGTTGCTGGAGGCAGGGACGACCTCTATGT
CTCCGACGCATTCCACAAAGCATTTCTTGAGGTAAATGAGGAAGGCAGTGAAGCAGCAGCGAGTACTTCT
GTCGTGATTACTGGCCGGTCACTGAACCCCAATAGGGTGACCTTCAAGGCCAACAGGCCCTTCCTGGTTC
TTATAAGGGAAGTTGCACTGAACACTATTATATTCATGGGGAGAGTGGCTAATCCTTGTGTGAACTAA

Translation (465 aa):
MYSPGAGSGAAGERKLCLLSLLLIGALGCAICHGNPVDDICIAKPRDIPVNPLCIYRSPGKKATEEDGSE
QKVPEATNRRVWELSKANSRFATNFYQHLADSKNDNDNIFLSPLSISTAFAMTKLGACNDTLKQLMEVFK
FDTISEKTSDQIHFFFAKLNCRLYRKANKSSDLVSANRLFGDKSLTFNESYQDVSEVVYGAKLQPLDFKE
NPEQSRVTINNWVANKTEGRIKDVIPQGAINELTALVLVNTIYFKGLWKSKFSPENTRKEPFYKVDGQSC
PVPMMYQEGKFKYRRVAEGTQVLELPFKGDDITMVLILPKPEKSLAKVEQELTPELLQEWLDELSETMLV
VHMPRFRTEDGFSLKEQLQDMGLIDLFSPEKSQLPGIVAGGRDDLYVSDAFHKAFLEVNEEGSEAAASTS
VVITGRSLNPNRVTFKANRPFLVLIREVALNTIIFMGRVANPCVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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