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Report for CCDS35522.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35522.1 Public Mus musculus 1 Il17f 23 108 98 CCDS HistoryNCBI Gene:257630Re-query CCDS DB by CCDS ID:35522.1Re-query CCDS DB by GeneID:257630See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35522.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039046.9 ENSMUSP00000046960.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039046.9Link to Ensembl Protein Viewer:ENSMUSP00000046960.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000039046Re-query CCDS DB by Protein ID:ENSMUSP00000046960
Original member Current member NCBI NM_145856.2 NP_665855.2 Accepted alive Link to Nucleotide Sequence:NM_145856.2Link to Protein Sequence:NP_665855.2Re-query CCDS DB by Nucleotide ID:NM_145856Re-query CCDS DB by Protein ID:NP_665855Link to BLAST:NP_665855.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_665855.2 161 Q7TNI7-1 161 100% 0 0

Chromosomal Locations for CCDS 35522.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 20777767 20778004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20779291 20779511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 20784173 20784199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (486 nt):
ATGAAGTGCACCCGTGAAACAGCCATGGTCAAGTCTTTGCTACTGTTGATGTTGGGACTTGCCATTCTGA
GGGAGGTAGCAGCTCGGAAGAACCCCAAAGCAGGGGTTCCTGCCTTGCAGAAGGCTGGGAACTGTCCTCC
CCTGGAGGATAACACTGTGAGAGTTGACATTCGAATCTTCAACCAAAACCAGGGCATTTCTGTCCCACGT
GAATTCCAGAACCGCTCCAGTTCCCCATGGGATTACAACATCACTCGAGACCCCCACCGGTTCCCCTCAG
AGATCGCTGAGGCCCAGTGCAGACACTCAGGCTGCATCAATGCCCAGGGTCAGGAAGACAGCACCATGAA
CTCCGTCGCCATTCAGCAAGAAATCCTGGTCCTTCGGAGGGAGCCCCAGGGCTGTTCTAATTCCTTCAGG
TTGGAGAAGATGCTCCTAAAAGTTGGCTGCACCTGTGTCAAGCCCATTGTCCACCAAGCGGCCTGA

Translation (161 aa):
MKCTRETAMVKSLLLLMLGLAILREVAARKNPKAGVPALQKAGNCPPLEDNTVRVDIRIFNQNQGISVPR
EFQNRSSSPWDYNITRDPHRFPSEIAEAQCRHSGCINAQGQEDSTMNSVAIQQEILVLRREPQGCSNSFR
LEKMLLKVGCTCVKPIVHQAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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