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Report for CCDS20555.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20555.1 Public Mus musculus 6 Kcna1 23 108 98 CCDS HistoryNCBI Gene:16485Re-query CCDS DB by CCDS ID:20555.1Re-query CCDS DB by GeneID:16485See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20555.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055168.4 ENSMUSP00000055225.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055168.4Link to Ensembl Protein Viewer:ENSMUSP00000055225.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000055168Re-query CCDS DB by Protein ID:ENSMUSP00000055225
Original member Current member EBI ENSMUST00000203094.1 ENSMUSP00000144947.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203094.1Link to Ensembl Protein Viewer:ENSMUSP00000144947.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203094Re-query CCDS DB by Protein ID:ENSMUSP00000144947
Original member Current member NCBI NM_010595.3 NP_034725.3 Accepted alive Link to Nucleotide Sequence:NM_010595.3Link to Protein Sequence:NP_034725.3Re-query CCDS DB by Nucleotide ID:NM_010595Re-query CCDS DB by Protein ID:NP_034725Link to BLAST:NP_034725.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034725.3 495 P16388 495 100% 0 0

Chromosomal Locations for CCDS 20555.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 126641868 126643355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1488 nt):
ATGACGGTGATGTCGGGGGAGAATGCGGACGAGGCTTCGACCGCTCCAGGTCACCCCCAGGATGGCAGCT
ACCCGAGGCAGGCGGACCACGACGACCACGAATGCTGCGAGCGCGTAGTAATCAACATCTCCGGGCTGCG
CTTCGAAACGCAGCTCAAGACTCTGGCACAGTTCCCCAACACGCTGCTGGGCAACCCGAAGAAACGCATG
CGCTACTTTGACCCCCTGAGGAACGAGTACTTCTTTGACCGCAACCGGCCCAGCTTCGATGCCATCCTTT
ATTACTACCAGTCCGGGGGCCGCCTGCGCAGGCCGGTCAACGTGCCCCTGGACATGTTCTCCGAGGAGAT
TAAATTTTACGAGTTGGGCGAGGAAGCCATGGAGAAGTTCCGGGAAGATGAGGGCTTCATCAAGGAAGAG
GAGCGCCCCCTACCCGAGAAGGAGTACCAGCGCCAGGTGTGGCTGCTCTTTGAGTATCCGGAGAGCTCAG
GACCTGCCCGGGTTATTGCCATTGTGTCGGTCATGGTCATCCTCATCTCCATAGTCATCTTTTGCCTGGA
GACTCTCCCTGAGCTGAAGGACGACAAGGACTTCACGGGCACCATCCACCGCATCGACAACACCACAGTC
ATCTATACTTCCAACATCTTCACAGACCCTTTCTTCATTGTGGAAACCTTGTGTATCATCTGGTTCTCTT
TTGAGCTGGTGGTGCGCTTCTTCGCCTGCCCCAGCAAGACAGACTTCTTTAAGAACATCATGAACTTCAT
CGACATTGTGGCCATCATCCCTTATTTCATTACCCTGGGCACGGAGATAGCTGAGCAGGAGGGAAATCAG
AAGGGCGAGCAGGCCACTTCCCTGGCCATCCTCAGGGTCATCCGCTTGGTAAGGGTGTTCAGAATCTTCA
AACTCTCCCGCCACTCCAAGGGCCTTCAGATCCTGGGCCAGACCCTCAAAGCTAGTATGAGGGAGTTAGG
GCTGCTCATCTTTTTCCTCTTCATTGGGGTCATACTGTTTTCTAGCGCAGTGTACTTTGCGGAGGCGGAA
GAAGCTGAGTCGCACTTCTCCAGTATCCCCGATGCTTTCTGGTGGGCGGTGGTGTCCATGACCACTGTGG
GATACGGTGACATGTACCCTGTGACAATTGGAGGCAAGATCGTGGGCTCCTTGTGTGCCATCGCTGGTGT
GCTGACAATTGCCCTGCCCGTACCTGTCATTGTGTCCAATTTCAACTATTTCTACCACCGAGAAACTGAG
GGGGAAGAGCAGGCTCAGTTGCTCCATGTTAGTTCTCCTAACTTAGCCTCTGACAGTGACCTCAGCCGCC
GCAGCTCCTCTACTATCAGCAAGTCTGAGTACATGGAGATCGAAGAGGATATGAACAATAGCATAGCCCA
TTACAGACAGGCTAATATCAGAACTGGTAACTGCACCACAGCTGATCAAAACTGCGTTAATAAGAGCAAG
CTCCTGACCGATGTTTAA

Translation (495 aa):
MTVMSGENADEASTAPGHPQDGSYPRQADHDDHECCERVVINISGLRFETQLKTLAQFPNTLLGNPKKRM
RYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEE
ERPLPEKEYQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFTGTIHRIDNTTV
IYTSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFITLGTEIAEQEGNQ
KGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAE
EAESHFSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETE
GEEQAQLLHVSSPNLASDSDLSRRSSSTISKSEYMEIEEDMNNSIAHYRQANIRTGNCTTADQNCVNKSK
LLTDV


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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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