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Report for CCDS26539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26539.1 Public Mus musculus 13 Zfp346 23 108 98 CCDS HistoryNCBI Gene:26919Re-query CCDS DB by CCDS ID:26539.1Re-query CCDS DB by GeneID:26919See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 26539.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021937.11 ENSMUSP00000021937.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021937.11Link to Ensembl Protein Viewer:ENSMUSP00000021937.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000021937Re-query CCDS DB by Protein ID:ENSMUSP00000021937
Original member Current member NCBI NM_012017.2 NP_036147.1 Accepted alive Link to Nucleotide Sequence:NM_012017.2Link to Protein Sequence:NP_036147.1Re-query CCDS DB by Nucleotide ID:NM_012017Re-query CCDS DB by Protein ID:NP_036147Link to BLAST:NP_036147.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_036147.1 294 Q9R0B7 294 100% 0 0

Chromosomal Locations for CCDS 26539.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 55105344 55105518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55113036 55113139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55113678 55113770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55115480 55115624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55122330 55122515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55130534 55130627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 55132307 55132394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (885 nt):
ATGGAGTGTCCTGCGCCCGATGCTACGGATGCTGCGGACCCTGGAGAAGCCGGACCGTACAAGGGCTCCG
AGGAGCCGGAGGGTCGGGAACCGGACGGAGTGCGCTTTGACCGCGAGAGGGCGCGTCGCCTGTGGGAAGC
TGTGTCCGGTGCGCAGCCGGCGGGGAGGGAGGAAGTGGAACACATGATCCAGAAGAACCAGTGTCTCTTC
ACCAGCACCCAGTGTAAGGTCTGCTGTGCCATGCTGATTTCTGAGTCTCAGAAGCTGGCGCATTACCAGA
GCAAAAAACATGCCAACAAAGTGAAGAGATACCTAGCAATCCATGGAATGGAGACAATAAAGGGGGACGT
GAAGAGGCTAGACTCAGATCAGAAGAGCAGCAGAAGCAAAGACAAGAACCACTGCTGCCCCATCTGTAAC
ATGACCTTTTCCTCCCCTGCTGTGGCACAGTCGCACTACCTGGGGAAGACCCACGCAAAGAGCCTAAAGC
TGAAGCAGCAGTCCACTAAGGGGGCAGCCTTGCAGCAGAATAGAGAGATGCTAGACCCAGACAAATTCTG
CAGCCTCTGCCATTCAACATTCAACGACCCTGCCATGGCTCAGCAACATTATATGGGCAAGAGACACAGG
AAGCAGGAGACTAAGCTCAAACTCATGGCACACTATGGGCGGCTGGCGGACCCTGCTGTCTCTGACTTAC
CAGCTGGGAAGGGCTACCCCTGCAAGACGTGTAAAATAGTGCTGAACTCCATAGAGCAGTACCAAGCTCA
CGTCAGTGGCTTCAAACACAAAAACCAGTCACCCAAAACATTGGTGACACTCGGGAGCCAGACGCCAGTG
CAAACACAACCCACTCCAAAGGACTCAAGCACAGTGCAAGACTAA

Translation (294 aa):
MECPAPDATDAADPGEAGPYKGSEEPEGREPDGVRFDRERARRLWEAVSGAQPAGREEVEHMIQKNQCLF
TSTQCKVCCAMLISESQKLAHYQSKKHANKVKRYLAIHGMETIKGDVKRLDSDQKSSRSKDKNHCCPICN
MTFSSPAVAQSHYLGKTHAKSLKLKQQSTKGAALQQNREMLDPDKFCSLCHSTFNDPAMAQQHYMGKRHR
KQETKLKLMAHYGRLADPAVSDLPAGKGYPCKTCKIVLNSIEQYQAHVSGFKHKNQSPKTLVTLGSQTPV
QTQPTPKDSSTVQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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