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Report for CCDS25864.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25864.1 Public Mus musculus 12 Bcap29 23 108 98 CCDS HistoryNCBI Gene:12033Re-query CCDS DB by CCDS ID:25864.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25864.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020979.8 ENSMUSP00000020979.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020979.8Link to Ensembl Protein Viewer:ENSMUSP00000020979.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000020979Re-query CCDS DB by Protein ID:ENSMUSP00000020979
Original member Current member EBI ENSMUST00000177962.8 ENSMUSP00000137260.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177962.8Link to Ensembl Protein Viewer:ENSMUSP00000137260.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177962Re-query CCDS DB by Protein ID:ENSMUSP00000137260
Original member Current member NCBI NM_001164090.1 NP_001157562.1 Accepted alive Link to Nucleotide Sequence:NM_001164090.1Link to Protein Sequence:NP_001157562.1Re-query CCDS DB by Nucleotide ID:NM_001164090Re-query CCDS DB by Protein ID:NP_001157562Link to BLAST:NP_001157562.1
Original member Current member NCBI NM_007530.3 NP_031556.1 Accepted alive Link to Nucleotide Sequence:NM_007530.3Link to Protein Sequence:NP_031556.1Re-query CCDS DB by Nucleotide ID:NM_007530Re-query CCDS DB by Protein ID:NP_031556Link to BLAST:NP_031556.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157562.1 240 Q61334 240 100% 0 0
NP_031556.1 240 Q61334 240 100% 0 0

Chromosomal Locations for CCDS 25864.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 31596342 31596377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31600644 31600744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31617075 31617180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31624115 31624250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31626726 31626876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31630793 31630893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 31634263 31634354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGACAATCCAATGGGCGGCGGTTGCCAGCTTTCTTTATGCTGAAATAGGACTCATTTTACTCTTCTGTC
TGCCCTTTATTCCTCCACAGAGATGGCAGAAGATTTTTTCATTTAGTGTCTGGGGTAAGATTGCAAGTTT
TTGGAACAAAGCTTTTCTTACCATTATAATACTATTGATCATTCTGTTTCTAGATGCCGTGAGAGAAGTA
AGAAAGTATTCGTCCACGAATGTTGTAGAGAAGAACTCAGCCATCAGACCGAGTGCCTTTGAGCACACAC
AGATGAAGCTCTTCAGGTCTCAAAGAAATCTGTATATTTCTGGATTCTCATTATTTTTTTGGCTAGTGTT
GAGACGTCTGGTTACGCTTATTACTCAGCTGGCAAAAGAAATAGCAAACAAAGGAGTGCTTAAAATTCAA
GCAGAAAATACCAATAAGGCTGCCAAGAAATTCATGGAAGAGAATGAAAAACTAAAATTGGGGCTAAGAA
ATGACAATGCTGAAGAACACCTTTTGGAAGCTGAAAATAAAAAACTAATAGAAAGCAAGGAGAACCTGAA
AACCGAGCTGAAGAAGGCTTCCGATGCCCTTTTGAAGGCCCAAAATGATGTCATGACTATGAAGATTCAG
TCAGAGAGACTTTCTAAAGAGTATGACCGACTCCTGAAAGAACACTCAGAACTTCAGAACCGTTTAGAGA
AAGAGAAGAAGAAAGGCCTGTGA

Translation (240 aa):
MTIQWAAVASFLYAEIGLILLFCLPFIPPQRWQKIFSFSVWGKIASFWNKAFLTIIILLIILFLDAVREV
RKYSSTNVVEKNSAIRPSAFEHTQMKLFRSQRNLYISGFSLFFWLVLRRLVTLITQLAKEIANKGVLKIQ
AENTNKAAKKFMEENEKLKLGLRNDNAEEHLLEAENKKLIESKENLKTELKKASDALLKAQNDVMTMKIQ
SERLSKEYDRLLKEHSELQNRLEKEKKKGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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