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Report for CCDS17411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17411.1 Public Mus musculus 3 Bche 23 108 98 CCDS HistoryNCBI Gene:12038Re-query CCDS DB by CCDS ID:17411.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029367.5 ENSMUSP00000029367.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029367.5Link to Ensembl Protein Viewer:ENSMUSP00000029367.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000029367Re-query CCDS DB by Protein ID:ENSMUSP00000029367
Original member NCBI NM_009738.3 NP_033868.3 Updated not alive Link to Nucleotide Sequence:NM_009738.3Link to Protein Sequence:NP_033868.3Re-query CCDS DB by Nucleotide ID:NM_009738Re-query CCDS DB by Protein ID:NP_033868
Current member NCBI NM_009738.4 NP_033868.3 Accepted alive Link to Nucleotide Sequence:NM_009738.4Link to Protein Sequence:NP_033868.3Re-query CCDS DB by Nucleotide ID:NM_009738Re-query CCDS DB by Protein ID:NP_033868Link to BLAST:NP_033868.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033868.3 603 Q03311 603 100% 0 0

Chromosomal Locations for CCDS 17411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 73639917 73640041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73648637 73648803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 73700572 73702091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1812 nt):
ATGCAGACTCAGCATACCAAGGTAACACAGACCCACTTCCTCCTATGGATTCTTCTGCTCTGCATGCCTT
TTGGGAAGTCACACACTGAAGAAGACTTCATAATTACAACCAAGACCGGAAGGGTCCGAGGGCTGAGCAT
GCCAGTTCTTGGTGGCACGGTGACTGCCTTTCTCGGTATCCCCTATGCACAACCTCCTCTGGGTAGCCTA
AGATTCAAAAAGCCGCAACCCTTAAACAAATGGCCTGACATCCATAATGCCACTCAATATGCAAATTCTT
GTTATCAGAACATAGACCAAGCCTTCCCAGGCTTCCAGGGGTCAGAAATGTGGAATCCAAACACAAACCT
CAGTGAAGACTGCTTGTATCTGAATGTTTGGATTCCAGTACCGAAGCCTAAAAATGCCACTGTCATGGTA
TGGATCTATGGTGGTGGCTTTCAAACTGGGACCTCTTCTCTACCTGTTTACGATGGGAAGTTTCTAGCTC
GTGTTGAAAGAGTTATTGTAGTTTCGATGAACTATAGGGTAGGTGCTCTAGGATTCCTAGCTTTTCCCGG
AAATCCCGATGCTCCAGGAAACATGGGTTTATTTGATCAACAGTTGGCACTTCAATGGGTCCAAAGAAAT
ATAGCTGCTTTTGGAGGGAATCCTAAAAGTATAACGATTTTTGGAGAAAGTGCAGGGGCAGCTTCAGTTA
GCTTACATTTGCTCTGCCCCCAAAGTTATCCTTTGTTTACCAGAGCCATTCTTGAAAGTGGCTCCTCTAA
TGCCCCCTGGGCAGTAAAGCATCCTGAGGAAGCCAGAAACAGAACCTTGACCTTAGCTAAATTTACTGGT
TGCTCAAAGGAAAATGAGATGGAGATGATTAAATGCCTTCGAAGTAAAGATCCTCAGGAAATTCTTCGCA
ATGAAAGGTTCGTTCTCCCCTCTGATTCCATCTTATCCATAAATTTTGGTCCAACAGTGGATGGCGATTT
TCTCACCGATATGCCCCACACACTACTCCAACTAGGAAAAGTGAAAAAAGCTCAGATCTTAGTGGGAGTT
AACAAAGATGAAGGGACAGCTTTCCTAGTGTACGGTGCTCCGGGTTTCAGCAAAGACAATGATAGCCTTA
TCACAAGGAAGGAATTTCAAGAAGGTTTAAATATGTATTTCCCTGGAGTGAGCAGATTGGGCAAGGAAGC
AGTTCTTTTCTACTACGTGGACTGGTTAGGTGAGCAGTCACCAGAAGTCTACCGTGACGCTTTGGATGAT
GTTATTGGAGATTACAACATCATCTGCCCTGCACTGGAGTTTACCAAGAAATTTGCAGAGCTTGAAAACA
ATGCTTTTTTCTACTTTTTCGAACATCGATCTTCCAAACTACCTTGGCCGGAATGGATGGGAGTGATGCA
TGGCTATGAAATTGAATTTGTGTTTGGCTTACCTCTGGGAAGAAGAGTTAATTATACGAGAGCTGAGGAA
ATCTTTAGTCGATCCATAATGAAAACTTGGGCAAATTTTGCAAAATATGGACATCCCAATGGGACCCAGG
GCAATAGCACAATGTGGCCTGTCTTCACAAGTACTGAACAAAAATACCTAACATTGAACACAGAGAAGTC
AAAAATATACTCTAAACTTCGTGCTCCCCAATGTCAGTTCTGGAGACTATTTTTTCCAAAAGTCTTGGAA
ATGACAGGAGATATTGATGAAACGGAGCAAGAGTGGAAGGCAGGATTTCATCGCTGGAGCAATTACATGA
TGGACTGGCAAAATCAATTTAACGATTACACTAGCAAGAAAGAGAGCTGTACAGCTCTCTAA

Translation (603 aa):
MQTQHTKVTQTHFLLWILLLCMPFGKSHTEEDFIITTKTGRVRGLSMPVLGGTVTAFLGIPYAQPPLGSL
RFKKPQPLNKWPDIHNATQYANSCYQNIDQAFPGFQGSEMWNPNTNLSEDCLYLNVWIPVPKPKNATVMV
WIYGGGFQTGTSSLPVYDGKFLARVERVIVVSMNYRVGALGFLAFPGNPDAPGNMGLFDQQLALQWVQRN
IAAFGGNPKSITIFGESAGAASVSLHLLCPQSYPLFTRAILESGSSNAPWAVKHPEEARNRTLTLAKFTG
CSKENEMEMIKCLRSKDPQEILRNERFVLPSDSILSINFGPTVDGDFLTDMPHTLLQLGKVKKAQILVGV
NKDEGTAFLVYGAPGFSKDNDSLITRKEFQEGLNMYFPGVSRLGKEAVLFYYVDWLGEQSPEVYRDALDD
VIGDYNIICPALEFTKKFAELENNAFFYFFEHRSSKLPWPEWMGVMHGYEIEFVFGLPLGRRVNYTRAEE
IFSRSIMKTWANFAKYGHPNGTQGNSTMWPVFTSTEQKYLTLNTEKSKIYSKLRAPQCQFWRLFFPKVLE
MTGDIDETEQEWKAGFHRWSNYMMDWQNQFNDYTSKKESCTAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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