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Report for CCDS40059.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40059.1 Public Mus musculus 7 Or52z1 23 108 98 CCDS HistoryNCBI Gene:18368Re-query CCDS DB by CCDS ID:40059.1Re-query CCDS DB by GeneID:18368See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40059.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000183254.2 ENSMUSP00000138389.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000183254.2Link to Ensembl Protein Viewer:ENSMUSP00000138389.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000183254Re-query CCDS DB by Protein ID:ENSMUSP00000138389
Original member Current member NCBI NM_013619.3 NP_038647.2 Accepted alive Link to Nucleotide Sequence:NM_013619.3Link to Protein Sequence:NP_038647.2Re-query CCDS DB by Nucleotide ID:NM_013619Re-query CCDS DB by Protein ID:NP_038647Link to BLAST:NP_038647.2

Chromosomal Locations for CCDS 40059.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 103787313 103788275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGAAGGTGGCCTCTTCCTTTCATAATTACACCAATCCACAGGATGTGTGGTATGTTCTGATTGGAATTC
CAGGACTAGAAGATCTACATTCCTGGATAGCCATCCCCATCTGTTCTATGTACATCGTGGCTGTCATAGG
CAATGTCCTCCTAATCTTCCTGATAGTGACTGAACGCAGTCTGCATGAGCCCATGTATTTTTTTCTCTCC
ATGCTGGCATTAGCAGACCTCCTGCTCTCCACAGCTACAGCCCCCAAGATGCTGGCTATCTTCTGGTTTC
ATTCCAGGGGTATATCCTTTGGTAGTTGTGTGTCCCAAATGTTCTTCATACATTTCATCTTTGTGGCAGA
GTCTGCTATTCTTCTGGCCATGGCATTTGACCGCTATGTGGCCATCTGTTACCCACTGAGATACACCACC
ATCCTTACTTCCTCAGTCATTGGCAAGATTGGCACAGCAGCTGTGGTCAGAAGCTTTCTCATCTGTTTTC
CATTCATCTTCCTGGTATATCGACTTCTGTATTGTGGGAAACTCATAATTCCCCATTCATACTGTGAGCA
CATGGGCATTGCCAGATTGGCATGCGACAATATCACTGTCAACATCATATATGGGCTGACAATGGCCCTC
CTGTCTACTGGGCTAGATATACTACTCATCATTATTTCCTACACCATGATTCTTCGCACTGTTTTTCAAA
TCCCTTCCTGGGCTGCCAGATACAAGGCCCTCAACACATGTGGCTCCCACATCTGTGTTATTCTTTTATT
CTACACTCCTGCATTCTTTTCATTTTTTGCCCATCGCTTTGGAGGCAAAACAGTTCCTCGCCACATCCAC
ATCCTAGTGGCCAACCTCTATGTGGTGGTGCCCCCAATGCTTAACCCCATCATCTATGGTGTGAAGACCA
AGCAGATCCAAGATCGAGTGGTTTTCCTTTTCTCCTCAGTGAGTACATGTTAA

Translation (320 aa):
MKVASSFHNYTNPQDVWYVLIGIPGLEDLHSWIAIPICSMYIVAVIGNVLLIFLIVTERSLHEPMYFFLS
MLALADLLLSTATAPKMLAIFWFHSRGISFGSCVSQMFFIHFIFVAESAILLAMAFDRYVAICYPLRYTT
ILTSSVIGKIGTAAVVRSFLICFPFIFLVYRLLYCGKLIIPHSYCEHMGIARLACDNITVNIIYGLTMAL
LSTGLDILLIIISYTMILRTVFQIPSWAARYKALNTCGSHICVILLFYTPAFFSFFAHRFGGKTVPRHIH
ILVANLYVVVPPMLNPIIYGVKTKQIQDRVVFLFSSVSTC


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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