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Report for CCDS17897.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17897.1 Public Mus musculus 3 Bcl10 23 108 98 CCDS HistoryNCBI Gene:12042Re-query CCDS DB by CCDS ID:17897.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17897.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029842.8 ENSMUSP00000029842.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029842.8Link to Ensembl Protein Viewer:ENSMUSP00000029842.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029842Re-query CCDS DB by Protein ID:ENSMUSP00000029842
Original member Current member NCBI NM_009740.2 NP_033870.1 Accepted alive Link to Nucleotide Sequence:NM_009740.2Link to Protein Sequence:NP_033870.1Re-query CCDS DB by Nucleotide ID:NM_009740Re-query CCDS DB by Protein ID:NP_033870Link to BLAST:NP_033870.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033870.1 233 Q9Z0H7 233 100% 0 0

Chromosomal Locations for CCDS 17897.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 145924459 145924515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145930406 145930694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 145932951 145933306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (702 nt):
ATGGAGGCTCCCGCACCGTCCCTCACGGAGGAGGATTTGACTGAAGTGAAGAAGGACGCTTTAGAGAATT
TACGTGTTTACCTGTGTGAGAAAATCATAGCTGAGAGACATTTTGATCATCTACGTGCAAAAAAAATACT
AAGTAGAGAAGACACAGAAGAAATTTCTTGCCGAACTTCAAGTAGAAAACGGGCTGGGAAGTTGTTAGAC
TACTTACAGGAGAACCCCAGGGGCCTGGACACCCTGGTGGAATCCATCCGCAGGGAGAAAACACAGAGCT
TCCTGATTCAGAAGATAACGGATGAGGTGCTAAAGCTTCGGAATATAAAACTGGAGCACCTCAAAGGCCT
GAAGTGCAGCAGCTGTGAGCCCTTTGCAGCCGGAGCCACCAACAACCTCTCTAGGTGCAATTCCGATGAG
AGCAATCTCTCTGAGAAACAGAGAGCATCCACTGTCATGTACCACCCGGAGGGAGAGTCCAGCACGGCTC
CCTTCTTCTCTATGGCGTCGTCCCTGAACTTGCCAGTCCTGGAAGTTGGCAGGACTGAAAACAGCAGCTT
CTCTTCAGCCACTCTTCCTCGACCTGGGGACCCTGGGGCTCCCCCTTTGCCCCCAGACCTTCGGTTGGAA
GAGGGGGGAAGTTGTGGAAACTCAAGTGAGATGTTTCTCCCCTTACGGTCACGGGCTCTTTCACGCCAAT
GA

Translation (233 aa):
MEAPAPSLTEEDLTEVKKDALENLRVYLCEKIIAERHFDHLRAKKILSREDTEEISCRTSSRKRAGKLLD
YLQENPRGLDTLVESIRREKTQSFLIQKITDEVLKLRNIKLEHLKGLKCSSCEPFAAGATNNLSRCNSDE
SNLSEKQRASTVMYHPEGESSTAPFFSMASSLNLPVLEVGRTENSSFSSATLPRPGDPGAPPLPPDLRLE
EGGSCGNSSEMFLPLRSRALSRQ


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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