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Report for CCDS18658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18658.1 Public Mus musculus 4 Tfap2e 23 108 98 CCDS HistoryNCBI Gene:332937Re-query CCDS DB by CCDS ID:18658.1Re-query CCDS DB by GeneID:332937See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18658.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048194.7 ENSMUSP00000035902.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048194.7Link to Ensembl Protein Viewer:ENSMUSP00000035902.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000048194Re-query CCDS DB by Protein ID:ENSMUSP00000035902
Original member Current member NCBI NM_198960.2 NP_945198.2 Accepted alive Link to Nucleotide Sequence:NM_198960.2Link to Protein Sequence:NP_945198.2Re-query CCDS DB by Nucleotide ID:NM_198960Re-query CCDS DB by Protein ID:NP_945198Link to BLAST:NP_945198.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_945198.2 442 Q6VUP9 442 100% 0 0

Chromosomal Locations for CCDS 18658.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126716513 126716795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126719412 126719553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126720486 126720604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126721855 126722077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126734600 126734651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126735170 126735652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126735965 126735991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1329 nt):
ATGTTGGTGCACACATACTCCGCCATGGAGCGCCCCGACGGGCTGGGCGCAGCGGCTGGCGGGACCCGCC
TGTCGTCCCTGCCCCAGGCGGCCTACGGGCCCGCGCCGCCACTGTGTCACACTCCCGCCGCCTCTGCCAC
CGCGGACTATCATCCTCCTTACTTCCCGCCGCCCTACCCTCAGGCGCCGCTGCCCTACGGCCAGGGTCCC
GACGCCACCGCTGCCTTTCCGCACCTCGCCGCTGACCCCTACGGCGGCCTAGCGCCCCTGGCGCAGCCGC
AGCCCCCGCAGGCCGCCTGGGCCGCACCCCGTGCGGCCGCCCGCGCCCACGACGAGCCGCCGGGCCTGCT
GGCGCCACCCGCCCGCGCTCTGGGTCTCGACCCGCGCCGAGACTACGCCGCCGCGGTTCCCCGGCTCCTG
CACAGCCTGGCCGACGGCGCGCACGGCCTGGCCGATGCTCCCCTCGGTCTTCCAGGATTGGCGGAGCCGC
CCGGTCTGGAGGAATTGCAGGCGATAGATGACCCTGGAATGAGCCTCCTGGACCAATCGGTGATCAAGAA
AGTCCCCATTCCCTCCAAAGCCGGCAGCCTCTCCACCCTCGCACTGTCCAAAGACAGCCTGGTTGGCGGC
ATCAGCAATCCCAGTGAGGTCTTCTGCTCCGTGCCTGGCCGGCTGTCGTTGCTCAGCTCAACATCCAAGT
ACAAGGTGACCGTGGGGGAGGTGCAGCGGCGACTCTCACCTCCTGAGTGCCTCAACGCCTCCCTCCTGGG
GGGTGTCCTCCGAAGGGCCAAGTCCAAAAATGGAGGCCGGTGTCTGCGGGAACGGCTGGAGAAGATTGGG
CTCAACTTGCCAGCTGGTCGTCGGAAGGCAGCCAACGTGACTCTGCTGACCTCGCTGGTGGAAGGAGAAG
CTGTGCACCTGGCTCGGGACTTTGGTTACGTTTGTGAGACTGAGTTTCCAGCCAAGGCGGCTGCTGAGTA
CCTATGCCGACAGCATGCCGACCCTGGGGAGCTACACAGCCGCAAGAGCATGCTGCTGGCTGCCAAGCAG
ATCTGTAAGGAGTTTGCAGACTTGATGGCTCAGGACCGCTCTCCACTGGGCAACAGCCGCCCGGCACTCA
TCCTGGAGCCTGGGGTGCAGAGCTGTCTGACACATTTTAGTCTCATCACTCATGGCTTTGGAGGGCCTGC
CATCTGCGCTGCTCTCACTGCCTTCCAGAACTACCTGCTAGAGTCACTCAAAGGACTGGAAAAGATGTTT
TTAAGCGGCGCCGGAGGTGGGCATGGAGAAAGCAAGGCCTCGGAGAAGGATACCAAGCATCGGAAGTAA

Translation (442 aa):
MLVHTYSAMERPDGLGAAAGGTRLSSLPQAAYGPAPPLCHTPAASATADYHPPYFPPPYPQAPLPYGQGP
DATAAFPHLAADPYGGLAPLAQPQPPQAAWAAPRAAARAHDEPPGLLAPPARALGLDPRRDYAAAVPRLL
HSLADGAHGLADAPLGLPGLAEPPGLEELQAIDDPGMSLLDQSVIKKVPIPSKAGSLSTLALSKDSLVGG
ISNPSEVFCSVPGRLSLLSSTSKYKVTVGEVQRRLSPPECLNASLLGGVLRRAKSKNGGRCLRERLEKIG
LNLPAGRRKAANVTLLTSLVEGEAVHLARDFGYVCETEFPAKAAAEYLCRQHADPGELHSRKSMLLAAKQ
ICKEFADLMAQDRSPLGNSRPALILEPGVQSCLTHFSLITHGFGGPAICAALTAFQNYLLESLKGLEKMF
LSGAGGGHGESKASEKDTKHRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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